Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04228 ATGGTACAGGAGAATCTCAATCCCCTTTTGAGGGGTGGTCCCAAGCATACAAGGCGTATACCGCAAGTGGACATTTTAACCGGACTTAGAGTTGATCTAGAACGATACGACTACAACTGGTTCAACAAGGGTTTTCCAATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGCTCGGCCAGCACGCCGCCGAGAGGAATCAAGACGCCACCGCGTACGTCGGCAATCTCGACCCTCAGATAAGTGAAGAGTTGTTATGGGAGTTGTTTGTTCAGGCTGGTCCTGTCGTTAATGTGTATGTTCCCAAGGACAGAGTCACCAACCAGCATCAGGGTTATGGGTTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGGAAACCCATCCGTGTAAATAAGGCATCCCAGGATAAAAAGAGCTTGGATGTTGGTGCTAACCTTTTCATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTACGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATCATGAGGGATCCTGAGACAGGAAATTCCCGTGGCTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCCGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACAAAGGGTGAACGGCATGGTACCCCCGCAGAAAGAGTTTTGGCAGCAAGTAATCCTACTGCACAGAAGAGCAGACCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAATGCTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCACGACCCTTTGGTAATGGAGTTGCTCCGGCTGCAATTCCAGCCCTCCGTCCACCACCCCCTCAAGCTGCAGCATTCCAGCCTATGCCAGTGCCAGGACAACCAACGTGGCATCAGCAACAGCCAGGTCAAAACATGTTGCCACCACCACCTCAAGTCCAGCAGTTCCGGCCACCTCACCCTGGCATGCAACAAATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCAGCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGACCACCACCACCTCAGCAACACGGTGGACGGCCTATGCCATACCCTCAGTCTGCAATGCCACCGCCACCACCTCCTCAGTAACCCTGGTACGCCACCACCTATTGAAGGAATGCAGATCATATGGAATGTTCCTGACTCCCAATATCTGGATTTTTGCCAATTTATTGTTAGAGTTGTATTGCATTATATTTCTGAACTAGTGTAGATTGTAATTTGAACAAACATCCTTGACAGTCAACGATCATAAAATTAATCCTGCCTAGAAAAGATAGACATTTGAGCTTTTGCTTTACCGCATGATATCCCCATTTTGCCATGTTTTCTTTTGCCTCTGCCTCAAGATTGGTAGGTTGCCCTTGGAGTTGCATAAGATTATTGATGTGTGCTGGACGAAACAAACAGATGACTGTAATATTATTCAAACTTTCAGTTCCTGTAATAGACACAAGGCATTGGTACGGCAAACATTAAATTAAC 1620 0.471 MVQENLNPLLRGGPKHTRRIPQVDILTGLRVDLERYDYNWFNKGFPMTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQANGVAPVPPRPFGNGVAPAAIPALRPPPPQAAAFQPMPVPGQPTWHQQQPGQNMLPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMASQPPPVWRPPPPQQHGGRPMPYPQSAMPPPPPPQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04228 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Pste1g04228 407 Gene3D - 157 246 IPR012677 -
Pste1g04228 407 MobiDBLite consensus disorder prediction 283 317 - -
Pste1g04228 407 FunFam Splicing factor 3b subunit 4 62 154 - -
Pste1g04228 407 MobiDBLite consensus disorder prediction 333 407 - -
Pste1g04228 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 230 IPR000504 GO:0003723
Pste1g04228 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Pste1g04228 407 MobiDBLite consensus disorder prediction 254 278 - -
Pste1g04228 407 SUPERFAMILY RNA-binding domain, RBD 71 241 IPR035979 GO:0003676
Pste1g04228 407 SMART rrm1_1 159 233 IPR000504 GO:0003723
Pste1g04228 407 SMART rrm1_1 72 145 IPR000504 GO:0003723
Pste1g04228 407 PRINTS Proline rich extensin signature 258 274 - -
Pste1g04228 407 PRINTS Proline rich extensin signature 303 324 - -
Pste1g04228 407 PRINTS Proline rich extensin signature 346 363 - -
Pste1g04228 407 PRINTS Proline rich extensin signature 278 290 - -
Pste1g04228 407 PRINTS Proline rich extensin signature 324 340 - -
Pste1g04228 407 PRINTS Proline rich extensin signature 376 401 - -
Pste1g04228 407 Gene3D - 62 156 IPR012677 -
Pste1g04228 407 MobiDBLite consensus disorder prediction 239 407 - -
Pste1g04228 407 FunFam splicing factor 3B subunit 4 155 246 - -
Pste1g04228 407 CDD RRM2_SF3B4 157 239 IPR034159 -
Pste1g04228 407 PANTHER SPLICING FACTOR 3B SUBUNIT 4 60 395 - -
Pste1g04228 407 CDD RRM1_SF3B4 74 146 IPR034158 -
Pste1g04228 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04228 Pste-Chr1 26622155 26630192 Transposed