Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04130 ATGGGTCGTCGAAAAATTCCAATTACAAGGGTGAAAAACGACAATACAAGACAAGTAACATTCTCGAAGCGTCGAACAGGTTTGTTTAAGAAAGCGAATGAGTTATCCATTTTGTGTGGTGTAAAGATTGCTATTGTTGTGTTCTCTCCTGGGGACAAGCCTTACTCTTTTGGACACCCCAGTGTTGATGTTGTTGCTGAACAATTTCTTCAACAAGAACCTGATTGCGAATCGAAGAAAGTGCAAAAGGGAGTGAAGAACTTAAAAAAAATTGATAAATTTGGGGATTTGTTGAAACATTTGGAAGAAGAACAAAAGAAAAGTGCGATGCTTGATGAAGCTATCAAACAAGGCATGGGGACACAACTTAATAATTATCACTATTCGCTTGCTCAACTTGGGTTAAAAGTGAAAAATCATCTTCGGGATGTCGAGTGTGCTGAAACAATGATGCTCTTTTCAGAGGAAGCAAGTTTAGGATTTAAAGTTATTTGTGGAACACTTTCTTTGGTTTTATTTTTAGACTGTGAGAGGGTGGAAATGGGTCGTAGGAAAATTGAGATTGCGAGGGTGAAGAACAGCAACACAAGACAAGTGACATTCTCAAAGCGTAGAACAGGTTTGTTTAAGAAAGCTAATGAGTTGTCGATTTTGTGCGGTGTAAAGATTGCTATTGTCGTGTTCTCTCCTGGGAACAAGCCTTACTCTTTTGGGCACCCTGATGTTGATGTTGTTGCAAAACAATTTCTTCAACAAGAATCTGATGACGAATCAAAGAAAATGCAAAGTGCAGTGACGATGAAACAGAATGCTAAGATTCATAAACTTGCTCATTTGATGAAACAGTTGGATGTGGAACAAAAGAAAAGTGCAGTACTTAATGAAGCTATGAAGCAAAGCTTAGGAACCACACTTGAATATTCAAATGATTCACTTGAAGAACTCAAGTTAAAAGTGAATGATCATCTTCGTGATGTTGAGGCTGCAGAAACGATGATTATCTATTCACAAGAAGCAGTATAA 1023 0.3773 MGRRKIPITRVKNDNTRQVTFSKRRTGLFKKANELSILCGVKIAIVVFSPGDKPYSFGHPSVDVVAEQFLQQEPDCESKKVQKGVKNLKKIDKFGDLLKHLEEEQKKSAMLDEAIKQGMGTQLNNYHYSLAQLGLKVKNHLRDVECAETMMLFSEEASLGFKVICGTLSLVLFLDCERVEMGRRKIEIARVKNSNTRQVTFSKRRTGLFKKANELSILCGVKIAIVVFSPGNKPYSFGHPDVDVVAKQFLQQESDDESKKMQSAVTMKQNAKIHKLAHLMKQLDVEQKKSAVLNEAMKQSLGTTLEYSNDSLEELKLKVNDHLRDVEAAETMIIYSQEAV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04130 340 PANTHER MADS BOX PROTEIN 183 319 - -
Pste1g04130 340 CDD MADS_MEF2_like 182 258 IPR033896 GO:0000977|GO:0045944
Pste1g04130 340 Gene3D - 194 275 IPR036879 GO:0003677|GO:0046983
Pste1g04130 340 SUPERFAMILY SRF-like 181 254 IPR036879 GO:0003677|GO:0046983
Pste1g04130 340 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pste1g04130 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 190 237 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 FunFam Agamous-like MADS-box protein AGL62 193 259 - -
Pste1g04130 340 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Pste1g04130 340 Coils Coil 312 332 - -
Pste1g04130 340 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pste1g04130 340 ProSiteProfiles MADS-box domain profile. 181 241 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 SMART madsneu2 181 240 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 PRINTS MADS domain signature 218 239 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 PRINTS MADS domain signature 203 218 IPR002100 GO:0003677|GO:0046983
Pste1g04130 340 PRINTS MADS domain signature 183 203 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04130 Pste-Chr1 24784043 24788634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04130 181 337 Type I MADS-box Gene Family AT2G34440 36.416 9.40e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste1g04130 SRF-TF 9e-25 No_clan