Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04105 AGGAGCAATGAGAACAAGAGTCCCCCTTGTTGCGCTACTGAAACGCGCTTCCTCGTCAATCCGACCTAAATCTCCAACTCTCCACAACGCAAAACGCGCGTTCACCGCACCCCTCCCTCCGCCAGAGGTGGTGGAGCCTTTCTGCGACCTCTCCGACGTCGTTTCGGCCCGTTCCCAACCCTCCCCATGGCTCCCCCAAATCCTAGCCCTAATCGACGGTTCCCCTTCCATGGAGCCCAACCTAACCCTCTTCTGCCGCAAGTTCCTCATCTCTCTCTCCCCCTCCTTCGTCGCCCACACCCTCACGCGCCTCTCCGACCCCCTCTCCGCCACCCGCTTCTTCTCCTGGGCCCAATCCCAGCCCAATTACTCCCACTCCCTCGACTGCCACCTCTCCCTCCTCCCTCTCCTCGACGCCGCCGCCCTCCGCCCCGCAATCGCCTCCCTCCGCCGCGCCAATTTCCCCCTAACCCTCCCGCAGCCCCTCCCTCGCCGCCACCCTCGCCGCCCACGCCCTCCCATGAAACTCTCCCACCTCCAACCCACCCTATCAATCCACAATTCCCTCATCAACGCCCTTGTTAACGCCTCCCTCGTCACCGCCGCCGAAAAGGTCCTCAAGGCAATGCACCAACGTGATGTTGTTAGTTACAATACCCTTATGAAAGGCCTCTGCAAAGCGGGGCGAACACGTCATGCGCTCGCCTCGCTCTGCGAAATGGAGGGGGAGGGAATTCCCCCTGATGAGGTCACTTACATGACCTTGATTCAGGCTTGTTACAATGAGGGTGATGTGGATTGTTGCTTGAGGCTTTACCATGAGATGGAGGAGAAAGGGGTGGGGATGAAAATCCCTCCTCATGTGTATAGTTTGGTGATATGTGGGTTGTGTAAGGTGGGGAAGGTTGTGGAGGGATGTGTTGTGTTTGAGGGTATGGTTAAGAGAGAGTGTAAGGGGCATAAGGCTGTTTATACTGCTGTGATTGATGGTTTTGCTAAGAGTGGGGATTTGGATTCAGCCATGGCGTTTTTTGAGCGGATGAAGGGGGATGGGGTGGAGCCGGATGAGGTTACTTATGGAGCTGTAGTGAGTGGGTTGTGTAAGGGTGGGAGAGTGGAGGAGGCGTTGGGTTATTTTAGGTTTTGTAAGGAGAGTGGTGTGGGGGTGAATGCAGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGTTGGGAGGGTGGATGAGGCCGAGAGGTTGTTTGAGGAGATGGTAGGGGAGGGGTGTTTGCAGGATTCGTATTGTTATAATGCGCTTATGGATGGTTTGTGCAAGAATGGGAGGGTTGATGAGGCACTGGCATTGTTTAGAAGGATGGAGCAAGAGGGGTGTGAGCAGACGGTTTATACGTTTACTATACTTATTAGTGAGCTTTTCAAGGAGAGGAGGAATGAGGACGCACTGAAGATGTGGGATGAGATGATTGACAAAGGTGTCACGCCAAATGTGGCGTGTTTTAGGGCTCTTTCGATTGGGCTGTGTCTTTCGGGCAAGGTTGCGAGGGCCTGCAAGGTTTTGGATGAGTTGGCTCCCATGGGGATTGTTCTGGAAACGGCTTATGAGGACATGCTTGGTGTGTTGTGCAAAGCTGGTCGTTTGAAGGAGGCCTGCAAGTTGGCTGATGGAATTGTGCATAGGGGGAGGGAAATACCAGGAAAGGTTCGGACTGTGCTGATTAATGCCTTGAGGAAGGCTGGTAATGCAGATTTAGCGATAAAGTTGATGCATAGTAAGATTGGTATTGGGTATGACCGAGTGCGTAGTGTTAAAAAGCGAGTGAAGTTCCAAACCCTCATTGACAATGCCTTTATTGTATTACTTACTCTCTTCTACGTTTATGAAACTACTCTTTTTGAGGTTTTGCTACATAAAGGTTCTGATGTGATGTTAATAATGTTGTTAAACTATTTTAGTCTCCTTGAATATGATCTACCCACTAAGATTCCAAAAGGAATGAAGAAAACCAATGAGAAACTGTCTACACAATTAGTTGGAAAGTGTCTCTGCCTCTTTGTGCAGTGCACGCTCTATTTCCGATGTTTGGAATTCAAGAAATTCTTTGGTTATGCATCTTACTCAAGTTTGGATGATCCTATTCCTATGGCTCGT 2149 0.5095 MRTRVPLVALLKRASSSIRPKSPTLHNAKRAFTAPLPPPEVVEPFCDLSDVVSARSQPSPWLPQILALIDGSPSMEPNLTLFCRKFLISLSPSFVAHTLTRLSDPLSATRFFSWAQSQPNYSHSLDCHLSLLPLLDAAALRPAIASLRRANFPLTLPQPLPRRHPRRPRPPMKLSHLQPTLSIHNSLINALVNASLVTAAEKVLKAMHQRDVVSYNTLMKGLCKAGRTRHALASLCEMEGEGIPPDEVTYMTLIQACYNEGDVDCCLRLYHEMEEKGVGMKIPPHVYSLVICGLCKVGKVVEGCVVFEGMVKRECKGHKAVYTAVIDGFAKSGDLDSAMAFFERMKGDGVEPDEVTYGAVVSGLCKGGRVEEALGYFRFCKESGVGVNAVFYSSLIDGLGKVGRVDEAERLFEEMVGEGCLQDSYCYNALMDGLCKNGRVDEALALFRRMEQEGCEQTVYTFTILISELFKERRNEDALKMWDEMIDKGVTPNVACFRALSIGLCLSGKVARACKVLDELAPMGIVLETAYEDMLGVLCKAGRLKEACKLADGIVHRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRVRSVKKRVKFQTLIDNAFIVLLTLFYVYETTLFEVLLHKGSDVMLIMLLNYFSLLEYDLPTKIPKGMKKTNEKLSTQLVGKCLCLFVQCTLYFRCLEFKKFFGYASYSSLDDPIPMAR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 286 316 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 392 423 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 460 494 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 183 213 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 355 385 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 248 278 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 213 247 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 425 456 IPR002885 -
Pste1g04105 714 NCBIfam pentatricopeptide repeat 321 354 IPR002885 -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pste1g04105 714 Pfam PPR repeat family 321 366 IPR002885 -
Pste1g04105 714 Pfam PPR repeat family 423 470 IPR002885 -
Pste1g04105 714 Pfam PPR repeat family 210 258 IPR002885 -
Pste1g04105 714 SUPERFAMILY HCP-like 332 457 - -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pste1g04105 714 Pfam PPR repeat 384 416 IPR002885 -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Pste1g04105 714 Gene3D Tetratricopeptide repeat domain 261 368 IPR011990 GO:0005515
Pste1g04105 714 Gene3D Tetratricopeptide repeat domain 171 260 IPR011990 GO:0005515
Pste1g04105 714 Gene3D Tetratricopeptide repeat domain 369 471 IPR011990 GO:0005515
Pste1g04105 714 PANTHER ATPASE EXPRESSION PROTEIN 3 176 455 - -
Pste1g04105 714 Gene3D Tetratricopeptide repeat domain 472 607 IPR011990 GO:0005515
Pste1g04105 714 Pfam PPR repeat 534 550 IPR002885 -
Pste1g04105 714 Pfam PPR repeat 286 315 IPR002885 -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Pste1g04105 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04105 Pste-Chr1 24241093 24246520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04105 211 594 Glycosyltransferase AT1G05670 30.000 5.02e-51 188