Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04087 GCAACTCTTTCTCATACACTCATGAACCTAAAACAAGAAGCCATAACACAACCCAAAACCATGGCATTCAAAGGTGTAGCTTTGTTGATGCTTTTCTTATCTCTTTTCGCATTCTCTTTCTCACACCCCGACGGTGGTGGCATTGCCGTATACTGGGGCCAAGACGGCCGTGAAGGGGATTTGAAAACCGCATGCGACTCTGGAAAGTACAAGATTATCCTCCTCGCTTTCCTTCACAAGTTCGGTGCTGGAAGAATCCCACAGTGGAACTTCGCTGGTCACTGTGACAATGGTGCCATGAAAAGGTGCACTGAGCTAGAGCCTGAGATCAAATATTGCCAGAGCATAGGCTTAAAGTTGCTCCTATCCATAGGAGGAGCCCCAGACTACTCAAACTACTCTCTGAGTTCACCAGAGGACGCAAAGGAGGTTGCAAGCTACCTCTACACCAACTTCCTTAGCGGCAACTTTGGTCCTTTGGGAAGTGTGTATTTGGACGGCATCGACTTCGACATCGAAGTCACCGAGGATTACTGGGACATCCTCGCCAGAGAACTCGACTTTTTCCGACGCACCACTGGTCGTTACTTTTACCTCTCTGCCGCACCTCAGTGTCCCATCCCAATTTACTATCTTGGCAAAGCCATCGCAACTCAACTCTTCGACTACATCTTTGTTCAGTTCTACAACAACCCAGGATGTTCTGCTTCGAACGGGAACGTGCAGCCTTTGTTGACCTCGTGGGATGATTGGGTCGCGTTAGTTCCATCTAACAACTCTTTGTTTGTGGGTCTTCCTGCATCCACAGCTGCAGCGTGGACCGGTTACATCGACCCGGTTGACCTGAACAACAAGGTGCTTCCATACGTGAAGAAAGCGTCAAACTACGAAGGAGTTATGCTATGGAACAGATACCAAGATGTTCTAAACAGTTACAGCGACAACATACTCTCCAACGTGCTCAAACCCTATTTGCTGTCTTTAACGTCCGTTTCGGACACTATTTATGAGTGCGTGTCAAAGGCTCTGCACCGTGTGTTACCCCGTGTTCAGTAG 1056 0.4839 ATLSHTLMNLKQEAITQPKTMAFKGVALLMLFLSLFAFSFSHPDGGGIAVYWGQDGREGDLKTACDSGKYKIILLAFLHKFGAGRIPQWNFAGHCDNGAMKRCTELEPEIKYCQSIGLKLLLSIGGAPDYSNYSLSSPEDAKEVASYLYTNFLSGNFGPLGSVYLDGIDFDIEVTEDYWDILARELDFFRRTTGRYFYLSAAPQCPIPIYYLGKAIATQLFDYIFVQFYNNPGCSASNGNVQPLLTSWDDWVALVPSNNSLFVGLPASTAAAWTGYIDPVDLNNKVLPYVKKASNYEGVMLWNRYQDVLNSYSDNILSNVLKPYLLSLTSVSDTIYECVSKALHRVLPRVQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04087 351 SUPERFAMILY (Trans)glycosidases 44 315 IPR017853 -
Pste1g04087 351 Pfam Glycosyl hydrolases family 18 48 307 IPR001223 GO:0005975
Pste1g04087 351 PANTHER ENDOCHITINASE 28 317 - -
Pste1g04087 351 Gene3D Glycosidases 46 330 - -
Pste1g04087 351 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 46 328 IPR001223 GO:0005975
Pste1g04087 351 FunFam Acidic endochitinase SE2 46 320 - -
Pste1g04087 351 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 165 173 IPR001579 GO:0004553|GO:0005975
Pste1g04087 351 CDD GH18_hevamine_XipI_class_III 46 316 IPR045321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04087 Pste-Chr1 23903339 23905511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04087 24 320 Glycoside Hydrolase AT5G24090 47.000 1.73e-89 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g04087 1 23903339 23905511 Pste1g04087 1 23903339 23905511 ECH