Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04042 ATGGATCCAACAAAGAAACGCAAGCTCGACGAGAACGGCTTCAACGATTCCCCCTCCGACCCTCTCAAACTCTCCGCCTCCGACGCGCGCAAGCTCATCGAGCGATTCTCCCAGGACCAGCTCCTCGACATCCTCCAAGGCGCCGTCGTCCGCCACCCCGACGTCCTCGCCGCTGTCCGCGCCGTTGCAGACCCCGACGTCTCGCAGCGCAAGCTCTTCATCCGCGGCCTGGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCGCCTTCGGCGACCTCGAGGAGGCCGTCGTCATCCTCGACAAGGCCACCGGAAAGTCCAAAGGTTACGGCTTTGTGACCTTTCGCCACGTCGACGGTGCGCTTCTTGCTTTGCGTGAGCCCAGCAAGCGCATCGACGGGCGCGTGACGGTTACGCAGCTCGCTGCGGCGGGGAACTCTGCGTCTAACGCGAATTCCGCTGACGTGGCTCTGAGGAAGATCTACGTGGCCAATGTTCCGCCGGACCTTGCTGCTGATAAGTTGTTGGCGCATTTTTCTGTTTATGGGGAGATTGAAGAGGGGCCGTTAGGGTTTGATAAGCAAACGGGGAAATCAAAAGGGTTTGCCTTGTTTGTGTATAAGAGTCCTGAGGGGGCTCAGGCGGCATTGATGGAGCCTGTGAAGAGTGTGGAGGGGAGGCAGTTGAGTTGTAAATTGGCGATTACTGACGGGAAGCAGGGGAAGCGGGCTGGGCCGGAGTCTGGGCCCCCCCATGGGCAGCATGGGGATGGAGCCGGGATGGGTATGGGAATGGGGATGGGTCCTAATGCGGGATCTGGACCTGGGCAGTATGGTGCCCCCGGACAGTATGGTGGCCCGGTTGGGCTTGGGAGTTATGGTGGGTTTGGTGGGCAGCCTCCGATGGGGAACCATAACCATCCCATGAATTCGTCCAATCCAGTGCCGGGATCTATGGGTGGTGGTGCTGGGTATGGGGGTGGAATGGGTGGGCCTTATGGTGGGTACGGTGGACCCGGAGCCACGGGATTCGGTGGCGGTGCTGGTGGGATGGGAGGAGGTAGTGGTGGTGGAATGGGTGCTGGCGCTGGTGGTGGGATGGGTGCTGGTGCTGGTGGGATGGGTGCTGGCGGTGCTGGTGGTGGAGGTTCTTTGTATAGATTGCAGGGTTCTGGTGGAATGGGTGGAATGCCTGGTGGTGGTGGAGGATATCCAGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGTGCCTCACCTGTGCCTAGGGTTCCTCCGGGTTCGATGTATCCCAATGTGCCCCCCTACTACTGA 1353 0.6016 MDPTKKRKLDENGFNDSPSDPLKLSASDARKLIERFSQDQLLDILQGAVVRHPDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSAFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANSADVALRKIYVANVPPDLAADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALMEPVKSVEGRQLSCKLAITDGKQGKRAGPESGPPHGQHGDGAGMGMGMGMGPNAGSGPGQYGAPGQYGGPVGLGSYGGFGGQPPMGNHNHPMNSSNPVPGSMGGGAGYGGGMGGPYGGYGGPGATGFGGGAGGMGGGSGGGMGAGAGGGMGAGAGGMGAGGAGGGGSLYRLQGSGGMGGMPGGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04042 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 230 IPR000504 GO:0003723
Pste1g04042 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 139 IPR000504 GO:0003723
Pste1g04042 450 MobiDBLite consensus disorder prediction 242 320 - -
Pste1g04042 450 MobiDBLite consensus disorder prediction 415 429 - -
Pste1g04042 450 MobiDBLite consensus disorder prediction 431 450 - -
Pste1g04042 450 SUPERFAMILY RNA-binding domain, RBD 150 265 IPR035979 GO:0003676
Pste1g04042 450 SMART rrm1_1 163 235 IPR000504 GO:0003723
Pste1g04042 450 SMART rrm1_1 71 143 IPR000504 GO:0003723
Pste1g04042 450 Gene3D - 54 149 IPR012677 -
Pste1g04042 450 MobiDBLite consensus disorder prediction 1 21 - -
Pste1g04042 450 MobiDBLite consensus disorder prediction 400 450 - -
Pste1g04042 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 243 IPR000504 GO:0003723
Pste1g04042 450 Gene3D - 150 288 IPR012677 -
Pste1g04042 450 SUPERFAMILY RNA-binding domain, RBD 62 146 IPR035979 GO:0003676
Pste1g04042 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Pste1g04042 450 PANTHER GEO13361P1-RELATED 53 352 - -
Pste1g04042 450 FunFam UBP1-associated protein 2C isoform A 53 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04042 Pste-Chr1 22712194 22713546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04042 158 237 C2H2 Transcription Factor Family AT2G19380 38.750 1.60e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g04042 1 22712194 22713546 Pste1g04042 1 22712194 22713546 ECH