Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02861 ATGAAAAAAGAATTAGAAGATCAAGGCCAGTGTTCTTCTCAACCAATCAACAACAACATTCAAAGCTTCCAAGAACACCTTCTTCAACAACAGATGCATCAGCAGCAACAAAACAGTGACATCTTTGGTGGTTCAAGAGGGTTAACATTCCCTGAAGTCTCTCCAATCATGCAACCATGGTCCATGCCTCCGGTTCACTCATTCAACCCCAGTCCGGTTCACTCATTCCACACCAACCCGGTTCGGGACCATCATGACCAAACATTCCTTGTCCCTCCCACACCCTCACCCTATGCAAGCTTCTTCACCAGAAGGGTCCCTTCTCTTCAGTTTGCATATGAGGGTCCCTCTTCTGATCAACACCACCATCTTAGGATCATTTCTGAGACCCTTGGACCCATGGTTCAACCCGGTTCAGCACCCTTTGGCCTCCAAGCCGAGTTGGGAAAGATGACTGCTCAAGAAATAATGGAAGCTAAAGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCTGAAAGAAGACGTAGAGAAAGAATCAACAACCATCTTGCTAAACTTCGCAGTTTGCTTCCTAACACTACCAAAACAGATAAAGCTTCATTATTAGCAGAAGTGATTCAGCACGTGAAGGAGCTAAAGCGCCAAACTTCACTGATAGCAGAAACAAGTCCTGTGCCAACTGAAGCAGACGAGTTAACAGTGGATGCAATCGACGAGGATGGAAAGTTTGTGATCAAAGCCTCACTTTGCTGTGAAGATAGGTCAGATCTCTTGCCTGACCTCATCAAAACCTTAAAGGGTTTGAGGCTGAAAACCCTTAAAGCTGAAATCACATCACTTGGTGGACGTGTGAAGAATGTGTTGGTCATAACCGGTGATAATAATAATGACGAGAATTCAAACCACACTAATGGAGAACAAAGCATGCAACAACAACAATATTGTATTAGTTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGTGGTGGGGATGAATCAACTTCTGGAAATGTTAAGCGTCAAAGGACTAATAATATCAATATCCTTGAACAAAGGTCTTAA 1068 0.4363 MKKELEDQGQCSSQPINNNIQSFQEHLLQQQMHQQQQNSDIFGGSRGLTFPEVSPIMQPWSMPPVHSFNPSPVHSFHTNPVRDHHDQTFLVPPTPSPYASFFTRRVPSLQFAYEGPSSDQHHHLRIISETLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAIDEDGKFVIKASLCCEDRSDLLPDLIKTLKGLRLKTLKAEITSLGGRVKNVLVITGDNNNDENSNHTNGEQSMQQQQYCISSIQEALKAVMEKSGGDESTSGNVKRQRTNNINILEQRS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02861 355 CDD ACT_UUR-ACR-like 248 327 - -
Pste1g02861 355 SMART finulus 169 218 IPR011598 GO:0046983
Pste1g02861 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Pste1g02861 355 Gene3D - 158 219 IPR036638 GO:0046983
Pste1g02861 355 PANTHER TRANSCRIPTION FACTOR BHLH30 39 350 IPR045847 GO:0003700|GO:0006355
Pste1g02861 355 MobiDBLite consensus disorder prediction 332 355 - -
Pste1g02861 355 FunFam transcription factor bHLH30 158 221 - -
Pste1g02861 355 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Pste1g02861 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 219 IPR036638 GO:0046983
Pste1g02861 355 CDD bHLH_AtAIG1_like 158 237 - -
Pste1g02861 355 MobiDBLite consensus disorder prediction 327 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02861 Pste-Chr1 12196519 12199922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02861 18 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.522 1.86e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g02861 HLH 2.4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02861 1 12196519 12199922 Pste1g02861 1 12196519 12199922 ECH