Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02337 TTAAAGCCTCTTCCTGCTTTCTTTCCTCCACCCTCCTCCTCTTTAATGCTCTTTTTCCCTTTCTTTCTCCTCTCTGGTATTCCCTTGGTGTGATTCTCCACCATCTCCCTAAAGAGCCATCAAACTTTATAAATAAAATCATAAAAGCATTTGAACACCATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACCATCCCCAAGCCAATGGTAGTGATAACACTCAGCTTCTTCCACCTTTGCCACCACAGCAACCTCATGTGGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCCAGACTAGCTAAGATACCACCTCCAGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACCAAATTTTGCTATTTCAACAACTATAGCCTCTCTCAACCACGCCACTTCTGCAAGACTTGTAGGCGTTATTGGACAAGAGGGGGTGCTTTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAATCTCCTGCATCATCTGACAAACAAACACTTTCGGGTTCTTCAAGTGCAATCCCTTCTGCTGGAACCACTCACGAGCTAATTGCCCAGTTGCCACAACCACCTAACCTTCCCTTCATGGCTTCCCTTCAGAACCTCAACCGTTATGCTGTTGGAAATATGGGTATTGGGTTGCGTGAGATTCACGGACACAACGACCATATGGGCTTTCAAATAGGCGGTGCTAATTCTTCAGGTGCTGCTGCTGCTGCAGGAATGGACCAGTGGCGCTTGCAGCAGGTTCCCTTCCTTAATGGTTTTGAATCAACTTCACCTGCTTCCTATTCTTTTCATCAAAATGAAACCATTGAAACACCTTCCAGTTTGGTTGGAGATTTAGCATCCAATTCTAGGGTTTCTCAGCTTCCGTCAGTTAAAATGGAAGAAAGTGGAGCTTTAAATTTGTCGAGATCACCACTGAATGTCTCACAAAATAACCAATACTATTCATGGACGGATATGTCAGGTCTTGCTTCCTCTTCCGCTAGTCATCTCTTGTAACTTGGACCGTATAACATGTTTGTGGCCAATAACCACATCACCCCAATTGAACTTCTTTGCCTGAATTTTTAATTACTTCAAATCGATCTCACCACACTCCTTGATCGATCAGAGATATTCTCAAACGACTTGGATCTTCCACCCAACACCTTGCCTTGACTTTATTCCAGTGTTGCATTCACAGAAATTAACGCAGACATGGTAGAATTGATATCTTCTTCTTGTAATTTCATTTCCCGTTATTGATTTCTGTTATGCTTTTTAGTTTTTTTTTATGCAGTCTAGTTTTATGTGTACTATATACATGGGCTTGCTTTAATTGTATAACTGTATGTGCATGTAATGTTTTGTGTTGCTGCTATCTGACACGTTGTGGTCTCATTTTGC 1467 0.4308 MVFSSIPVFVDPPNWQQQPNHPQANGSDNTQLLPPLPPQQPHVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSDKQTLSGSSSAIPSAGTTHELIAQLPQPPNLPFMASLQNLNRYAVGNMGIGLREIHGHNDHMGFQIGGANSSGAAAAAGMDQWRLQQVPFLNGFESTSPASYSFHQNETIETPSSLVGDLASNSRVSQLPSVKMEESGALNLSRSPLNVSQNNQYYSWTDMSGLASSSASHLL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02337 306 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Pste1g02337 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 228 IPR045174 GO:0003700|GO:0006355
Pste1g02337 306 Pfam Dof domain, zinc finger 66 121 IPR003851 GO:0003677|GO:0006355
Pste1g02337 306 MobiDBLite consensus disorder prediction 11 48 - -
Pste1g02337 306 MobiDBLite consensus disorder prediction 111 146 - -
Pste1g02337 306 MobiDBLite consensus disorder prediction 11 33 - -
Pste1g02337 306 MobiDBLite consensus disorder prediction 131 146 - -
Pste1g02337 306 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02337 Pste-Chr1 8076450 8078097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02337 1 300 C2C2-Dof Transcription Factor Family AT2G37590 37.677 2.73e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste1g02337 zf-Dof 1.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03333 3 26115742 26116704 Pste1g02337 1 8076450 8078097 PCT