Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02237 ATGAACACAGGCGTGAGCGTTACAAGAAAAGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGAGGCTCTGCAGAAGCTGGTGGAGAAACACGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATACCAGGGCGGTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAATCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACCCCTGAAGAGGACGACACCATAATCCGGGCCCATGCCCGCTTCGGCAACAAATGGGCCACCATAGCCCGGCTCCTCCACGGTAGAACAGACAACGCAATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGCTCTTCACCCATGATCGAAGACAACCCTCATCCTCATCCGCTGAAGAGGTCCGTCAGCGCCGGTGCCGCCATCCCGGTCTCCACTGGACTCTACATGAACCCCCCCACACCCGGTAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTACCGGTTACATCCTCTGCCCATGTTTACCGACCCGTGCCTAGGACCGGCGGGGTTCTACCTCCCGTAGAAACCACCTCGTCCTCCAATGACCCTCCCACTTCGCTGTCCCTATCACTCCCCGGTGTGGATTCTGCCGAAGTCTCTAATCGGACAACTGAACCAATCCATGCTGCACCGCCGCCATCGAATGCCATCCCTTTGCTTCCAATCATGACTGCTCCGGAGGCCCTACCCTCCTTGAAAACCACCGGGTTGGCGCCCTTTAATTTAAGTGCAGAGTTTCTGGCCGTGATGCAGGACATGATAAGGAAGGAGGTGAGGACTTATATGGAGCTGCAGAACCAGAATGGGATGTGTTTTCATGCTGCAGCTGATGGCTTTAGGAATGCTTCCGTCAAGAGAATTGGGATTAGCAGGATTGACTAG 927 0.5739 MNTGVSVTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSSPMIEDNPHPHPLKRSVSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVPVTSSAHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSAEVSNRTTEPIHAAPPPSNAIPLLPIMTAPEALPSLKTTGLAPFNLSAEFLAVMQDMIRKEVRTYMELQNQNGMCFHAAADGFRNASVKRIGISRID 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02237 308 MobiDBLite consensus disorder prediction 1 20 - -
Pste1g02237 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste1g02237 308 MobiDBLite consensus disorder prediction 149 172 - -
Pste1g02237 308 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pste1g02237 308 PANTHER MYB PROTEIN-RELATED 16 188 - -
Pste1g02237 308 MobiDBLite consensus disorder prediction 145 208 - -
Pste1g02237 308 FunFam MYB transcription factor 16 67 - -
Pste1g02237 308 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Pste1g02237 308 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
Pste1g02237 308 CDD SANT 18 60 IPR001005 -
Pste1g02237 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Pste1g02237 308 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Pste1g02237 308 SMART sant 67 115 IPR001005 -
Pste1g02237 308 SMART sant 15 64 IPR001005 -
Pste1g02237 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Pste1g02237 308 Gene3D - 69 133 - -
Pste1g02237 308 Gene3D - 15 67 - -
Pste1g02237 308 CDD SANT 70 113 IPR001005 -
Pste1g02237 308 FunFam Transcription factor MYB44 70 116 - -
Pste1g02237 308 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02237 Pste-Chr1 7527300 7528226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02237 8 308 MYB Transcription Factor Family AT4G37260 52.108 4.24e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g02237 Myb_DNA-binding 1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02237 1 7527300 7528226 Pste7g01048 7 9591945 9592817 ECH
Pste8g00875 8 4499760 4500557 Pste1g02237 1 7527300 7528226 ECH
Pste1g02237 1 7527300 7528226 Pste1g02237 1 7527300 7528226 ECH
Pste7g01048 7 9591945 9592817 Pste1g02237 1 7527300 7528226 PCT