Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01672 ATGGCTCCAACATTCAACAATCAACAAGACGCAAAGGCAGAGATGAAGATCCTGTGTGACGTGTGTAACAAAGAAGTGGCCTCCTTGTTCTGCCCCTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATGGCACCATCCACACTGCCAACAAGCTCGCAGACAAACACACGCGCTTCTCTCTTCATCACCCCTCTTCCCAACACTCCCCTCTCTGTGATATCTGTCATGATAAACGTGCATATGTTTTTTGCAAAGAGGACAGGGCAATACTTTGTAGAGAATGCGACCTTTCAATTCACCAGGTCAACGAACTTACCAAGAAACACAACAGGTTTCTTCTCAGTGGAGTAAAGATCGGTGCTGATGCTGATACTGATCTTTCACACCCAACATCACTAATTTCTTCCAATGACACTGAAGTAAGAACAAGATCTAGTTCTAAAACAAACAGACCAAGTTCGCTATCAAATGAAAACATCACTTCTTATGGCACGGTTGGAGACAGCGTGGCTTGTGACACGGCTTCGGTTTCCACAAGCAGCATTTCTCAATATTTGATTGAGACCATTCCTGGTTACTGCATGGAAGACCTTCTAGATGCTTCATTTGCATCAAATGGTTTCTCTATGGATTATGAGCATCAATCAGCATTTCAGAACCAACATGTTGAACCCAGAGTGTGTTCCTGGGTGCCACAGTTTCAAGGTGGATCACCTCATCAACTTCCCCAGATTGATTCTTTAGTTGGATTTATGGAAATGCCTAAAGCCAAAGCTGCTGAAGGATACTCCAATTGGATATATAATTACGACTACGTAGCCTACAAAGTTCCTTCAATTAGTCCTCCATTGATAAAAAAATGTAAACGCTCTCGTTAG 879 0.4323 MAPTFNNQQDAKAEMKILCDVCNKEVASLFCPSDEAALCHACDGTIHTANKLADKHTRFSLHHPSSQHSPLCDICHDKRAYVFCKEDRAILCRECDLSIHQVNELTKKHNRFLLSGVKIGADADTDLSHPTSLISSNDTEVRTRSSSKTNRPSSLSNENITSYGTVGDSVACDTASVSTSSISQYLIETIPGYCMEDLLDASFASNGFSMDYEHQSAFQNQHVEPRVCSWVPQFQGGSPHQLPQIDSLVGFMEMPKAKAAEGYSNWIYNYDYVAYKVPSISPPLIKKCKRSR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01672 292 CDD Bbox1_BBX-like 71 114 - -
Pste1g01672 292 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pste1g01672 292 ProSiteProfiles Zinc finger B-box type profile. 67 114 IPR000315 GO:0008270
Pste1g01672 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 15 254 - -
Pste1g01672 292 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pste1g01672 292 SMART bboxneu5 67 114 IPR000315 GO:0008270
Pste1g01672 292 Pfam B-box zinc finger 70 110 IPR000315 GO:0008270
Pste1g01672 292 Pfam B-box zinc finger 17 58 IPR000315 GO:0008270
Pste1g01672 292 MobiDBLite consensus disorder prediction 129 159 - -
Pste1g01672 292 Gene3D Classic Zinc Finger 15 110 - -
Pste1g01672 292 CDD Bbox1_BBX-like 18 61 - -
Pste1g01672 292 FunFam B-box zinc finger protein 21 15 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01672 Pste-Chr1 5148079 5149115 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pste1g01672 zf-B_box 6.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01672 1 5148079 5149115 Pste1g01672 1 5148079 5149115 ECH
Pste1g01672 1 5148079 5149115 Pste1g01611 1 4974752 4977187 ECH
Pste1g01672 1 5148079 5149115 Pste1g02979 1 13077827 13080952 ECH