Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01222 ATGGGATATGAAACCAGAAAACTCTCAGATGAGTATGAAGTTGCTGAAGTCTTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGCACCAGAAAATCAAGCACTGAGACCAAAACTCATGTGGCCATCAAAACCCTGAGAAGGTTAGGCACTGCCTCAAACTCCAACAACCCTTTTGGGTTTCCAAGGCCAAAGGGTGGAGAGAAGAGCACAGCAGCTATGATGGGGTTCCCCACATGCAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAATGTTTCACCACACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTCCACAGGGATTTGAAGCCTGAGAATTGTCTTTTTTTGGATGTGAGGAGGGACTCTCCTCTTAAGATCATGGACTTTGGGTTGAGTTCAGTTGAGGAATTCACTGACCCTGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATTACTACCAAGAGTGATATGTGGTCTCTGGGGGTGATTCTATATATCTTGCTCTCTGGGTATCCACCTTTCATTGCTGAGTCGAATCGCCAGAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACATGGAAGGGCATTTCTCATTCAGCAAAGCAACTGATTTCAGATCTTCTGACTGTTGATCCTAGTAGAAGACCTAGTGCTCAACATCTTCTGAGTCATCCATGGGTGGTAGGTGATAAAGCCAAAGATGATGCAATGGACCCTGAGATTGTTTCAAGATTGCAGAGCTTCAACGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCACCACAATCTTCCTCAGAACCAAAAAGCTGAAGTCCTTGGTGGGAACACATGATCTCACAGAACAGGAAATTGAAAATCTCAGGATAAGTTTTAAGAAAATATGTGTGAGTGGAGACAATGCCACTCTATCAGAGTTTGAGGAGGTGCTAAAAGCAATGAACATGCCATCATTGATCCCTCTAGCACCACGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATACTATGTGGCTTTTCCAGCTTCAAAAATTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACGGATCGATCAGGGTGCATCACCAAGGAAGAAGTAGCATCCATGCTAAGAGCTTTGCCAGAAGAGTGTCTCCCAGCTGATATAACAGAACCTGGAAAACTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTCACCTTTGAAGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGACATGGTTCTCTCTTCAATTCGACCACAGTAGTAGTTCTCCAAATTTTCATTAATTTATGGTGCTACTTAATATGGTCTTTTACTATAATTAATGGAATACTAATTTTGTCCTTTTCTTTATTTCTTTCTATCTAGAGCATTCTTTTTTCTGACTTATTGATACAATAGGAAAATAGAGTTTTGGATACTATATAGTTAAAATGTGCCATACAATTGTTGCAGTCTCCATTAATGAATTTTCTTTTCTTGTTTTTCTCTTGAGTTGAATCTGAGATTTTTGAAAACGATCCAATTTCTT 1746 0.4078 MGYETRKLSDEYEVAEVLGRGGFSVVRKGTRKSSTETKTHVAIKTLRRLGTASNSNNPFGFPRPKGGEKSTAAMMGFPTCRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAESNRQKQQMIMNGNFSFYEKTWKGISHSAKQLISDLLTVDPSRRPSAQHLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSTTIFLRTKKLKSLVGTHDLTEQEIENLRISFKKICVSGDNATLSEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDMVLSSIRPQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01222 492 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Pste1g01222 492 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Pste1g01222 492 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 130 - -
Pste1g01222 492 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 117 291 - -
Pste1g01222 492 Pfam EF-hand domain pair 407 476 IPR002048 GO:0005509
Pste1g01222 492 CDD EFh 375 434 IPR002048 GO:0005509
Pste1g01222 492 SMART efh_1 372 400 IPR002048 GO:0005509
Pste1g01222 492 SMART efh_1 408 436 IPR002048 GO:0005509
Pste1g01222 492 SMART efh_1 450 478 IPR002048 GO:0005509
Pste1g01222 492 SUPERFAMILY EF-hand 319 484 IPR011992 -
Pste1g01222 492 PRINTS Recoverin family signature 400 419 - -
Pste1g01222 492 PRINTS Recoverin family signature 422 440 - -
Pste1g01222 492 PRINTS Recoverin family signature 330 349 - -
Pste1g01222 492 PRINTS Recoverin family signature 376 397 - -
Pste1g01222 492 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 317 486 - -
Pste1g01222 492 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Pste1g01222 492 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Pste1g01222 492 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Pste1g01222 492 Gene3D Transferase(Phosphotransferase) domain 1 120 275 - -
Pste1g01222 492 CDD EFh 409 476 IPR002048 GO:0005509
Pste1g01222 492 Gene3D Phosphorylase Kinase; domain 1 2 119 - -
Pste1g01222 492 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Pste1g01222 492 Pfam EF hand 377 392 IPR002048 GO:0005509
Pste1g01222 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 121 - -
Pste1g01222 492 ProSiteProfiles Protein kinase domain profile. 12 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g01222 492 Pfam Protein kinase domain 122 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g01222 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Pste1g01222 492 SMART serkin_6 12 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g01222 492 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Pste1g01222 492 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Pste1g01222 492 Gene3D - 291 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01222 Pste-Chr1 3903862 3913156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01222 79 479 EF-hand Containing Proteins AT3G10660 32.287 1.28e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Pste1g01222 Pkinase 8.1e-40 CL0016