Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01018 ATGAAATTGCTGAAATCCTTTGTTAACCTTTTCTTCATTTTGTTGTTTTTTGTGGCCTTTACCAATATTATCCAATTTTCCTTGGGAGACTGTGATAATCTACAAGACACTTGCCCTGCAGTTCCTCCCAACAAGCAAACCATATTCATCAATGGTCTACAATGCAAAAACCCAGTTAATGTCACAGTTCAAGATTTCATAACCACAGAACTAAGCACATCTGGCTCTAGAGACATTTTTGGTGCAGCTATGAAAATTGTGAGTGCTTCTGAGTTTATTGGTCTAAACACTCTTGGCCTCTCCATTGGGAGAATTGACCTTGATGGGAATGGCCTAGTGAACTTCCACTACCATCCTAGGGCTACTGAGATGATCTTTGTCACAAAAGGTGCAGTGCTTGCAGGATTTGTTGATACCAAAAACCAGTATTTTCAGAAATTTCTCAAGGTTGGTGATGTCTTTGTGTTCCCTAAGGCTTTGTTCCACTTCTCTTTAAATACTGGTTTTGAAGAAGCCACTGTGTTCTCAGTGTACAATAGCCAAAACCCTGGCTTTCTTCACATTCATCTGTCTGTGTTGGAAGAATCAAGCACTGTTGTTAATATCTCAAGTCTCAACCCTTCCAAACTTGCCTTTGTTGATGCAAACCTCGTTGCTTAA 660 0.3985 MKLLKSFVNLFFILLFFVAFTNIIQFSLGDCDNLQDTCPAVPPNKQTIFINGLQCKNPVNVTVQDFITTELSTSGSRDIFGAAMKIVSASEFIGLNTLGLSIGRIDLDGNGLVNFHYHPRATEMIFVTKGAVLAGFVDTKNQYFQKFLKVGDVFVFPKALFHFSLNTGFEEATVFSVYNSQNPGFLHIHLSVLEESSTVVNISSLNPSKLAFVDANLVA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01018 219 FunFam germin-like protein subfamily 2 member 1 29 206 - -
Pste1g01018 219 SUPERFAMILY RmlC-like cupins 30 195 IPR011051 -
Pste1g01018 219 SMART Cupin_1_3 77 203 IPR006045 -
Pste1g01018 219 CDD cupin_OxOx 30 188 IPR001929 GO:0030145
Pste1g01018 219 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Pste1g01018 219 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Pste1g01018 219 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Pste1g01018 219 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Pste1g01018 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 26 196 - -
Pste1g01018 219 Gene3D Jelly Rolls 29 213 IPR014710 -
Pste1g01018 219 Pfam Cupin 81 187 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01018 Pste-Chr1 3249214 3253317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01018 4 185 Miscellaneous Gene Families AT5G20630 37.158 1.55e-35 123