Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5328 ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAGCAGCAACAGAATCATCATCATCATCATCAACCAGGAAACGGCGGTTCCGGTTCCGGTTCCATCTCTCAACAACTACTTCAGACACCACCGTCGCAACCACCACAAACACAGCCTCAGCCTCAGCCTCATGGAGCTGGTAGCATAGGCTCAATTAGGCCGGGATCGATGTCCGACAAAGCAAGAATGGCGAACATGCCTATACCAGAGACTGCGCTGAAATGTCCGCGTTGCGAATCAACCAATACGAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGACACTTCTGCAAGACTTGCAGAAGGTACTGGACGAAAGGGGGCACGCTAAGAAACGTCCCGGTTGGGGGAGGCTTCCGGAGAAACAAAAGAAGCAAAGGAAGTAACTCGGCGAAATCTCCGGCGAGCTCCGATCTTCAAACCGGCAGTGCTAGTTCGACAAACTCAATCACCTCGCATAACAATCACTCGTCCGCCTCCGCCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGATTCATGACACCATTACACCATAACTTCAATAACCCTAACGAATTCGGAGGCGGCGAATTAGGGTTAAACTATGGATTTAGTTACATGGGAGGAGGAGGAGGTGGTGATTTAGGAAGTTCTTTACTTGGTGGAAATGGTAACTCAATTCTATCTTCAACAAATGGTTTGGAACAATGGAAGATGCCTATGCCTATGCCTATGCCTATGCCTATGACTATGCCAATGACTCATCATCAACAACATCAATTTCCATTTTTGACCAACTTGGAAACTTCCAATGGAAACTTATACCCTTTTGAAGGAAATGTTCAAAACCATGATATGATGATATCTAACAGTGGATACATGAGGCCAAAGGTAAATTCAACTTCTGGAATTATGACTCAACTAGCTTCTGTGAAAATGGAAGATAGTATTAATAGAGGCTTTTTGGGAATTAGCAGCAACAATAACAATAATAATAATCATCAAGGAAGTGAACAATATTGGAATAGCGCTGTTATCATTGGTAATTCCGCAGCTAATTGGAATGATCATGTTTCTGGTTTTAGTTCTTCTTCTAATACTACTAGTAATAACCAGATGTAG 1170 0.4359 MVFTSIPAAYLDAANWQQQQQNHHHHHQPGNGGSGSGSISQQLLQTPPSQPPQTQPQPQPHGAGSIGSIRPGSMSDKARMANMPIPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTKGGTLRNVPVGGGFRRNKRSKGSNSAKSPASSDLQTGSASSTNSITSHNNHSSASADILGLTPQMSSLRFMTPLHHNFNNPNEFGGGELGLNYGFSYMGGGGGGDLGSSLLGGNGNSILSSTNGLEQWKMPMPMPMPMPMTMPMTHHQQHQFPFLTNLETSNGNLYPFEGNVQNHDMMISNSGYMRPKVNSTSGIMTQLASVKMEDSINRGFLGISSNNNNNNNHQGSEQYWNSAVIIGNSAANWNDHVSGFSSSSNTTSNNQM* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5328 389 Pfam Dof domain, zinc finger 89 144 IPR003851 GO:0003677|GO:0006355
Psa7g5328 389 ProSitePatterns Zinc finger Dof-type signature. 92 128 IPR003851 GO:0003677|GO:0006355
Psa7g5328 389 MobiDBLite consensus disorder prediction 16 48 - -
Psa7g5328 389 MobiDBLite consensus disorder prediction 16 64 - -
Psa7g5328 389 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 383 IPR045174 GO:0003700|GO:0006355
Psa7g5328 389 ProSiteProfiles Zinc finger Dof-type profile. 90 144 IPR003851 GO:0003677|GO:0006355
Psa7g5328 389 MobiDBLite consensus disorder prediction 148 177 - -
Psa7g5328 389 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 13 383 - -
Psa7g5328 389 MobiDBLite consensus disorder prediction 135 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5328 Psa-Chr7 462361175 462364257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5328 1 254 C2C2-Dof Transcription Factor Family AT2G37590 43.511 9.57e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa7g5328 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5328 - - minc:123229621 285.034