Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5240 ATGGCTAAAGATGTTGAGGTCCAAGAACAAGGTGAATACTCAGCAAAAGACTACCAAGATCCACCTCCAGCACCATTGATAGACCTCGATGAGTTAACAAAGTGGTCCTTTTACAGAGCTCTTATAGCTGAATTCGTAGCAACACTTCTCTTTCTATATGTTACTATTTTAACCATCATTGGTTACAGCCACCAGACTGATGCTAACGCCGGTGGTACCGACTGCGACGGTGTTGGCATTTTGGGTATTGCCTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCTGCGGTGACGTTCGGGCTATTCGTGGGACGCAAAGTGTCCTTGTTAAGGGCAGTATTCTACATGGCAGCACAGTGTGCAGGAGCAGTCTGTGGTACTGGACTGGCCAAGGGTTTTCAGAAATCATTCTTTGACAGGTATGGAGGTGGTGCCAACTTTATCCATGATGGTTACAACAAAGGTACAGCTTTAGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCAACTGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTTTTGGCACCATTACCTATTGGGTTTGCTGTTTTCATGGTTCACTTGGCTACTATTCCGATCACCGGTACCGGTATTAACCCGGCAAGAAGTTTCGGATCCGCTGTGATCTTAAACCAGGGGAAAATTTGGGATGATCAGTGGGTTTTCTGGGTTGGACCAATAATTGGAGCAACCGTGGCTGCAATTTACCACCAATACATTCTAAGAGGGTCAGCAATTAAAGCTCTTGGATCATTCAGGAGCAACACTTAA 858 0.4592 MAKDVEVQEQGEYSAKDYQDPPPAPLIDLDELTKWSFYRALIAEFVATLLFLYVTILTIIGYSHQTDANAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLLRAVFYMAAQCAGAVCGTGLAKGFQKSFFDRYGGGANFIHDGYNKGTALGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVILNQGKIWDDQWVFWVGPIIGATVAAIYHQYILRGSAIKALGSFRSNT* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5240 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PANTHER AQUAPORIN PIP2-7 1 285 - -
Psa7g5240 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Psa7g5240 285 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Psa7g5240 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Psa7g5240 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5240 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5240 Psa-Chr7 458647213 458649543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5240 1 283 Major Intrinsic Protein MIP AT5G60660 78.092 6.25e-168 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5240 K09872 - gmx:100818032 518.079