Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4974 ATGGTTTTTTCTTCTATTCAAGGTTATGTAGATCCACCTAATTGGCACCACCAGCAACCAAATCATCATCATCAACAAAATGGAACCGATAACACTCAACTACTTCCACCTTTACCTCCTCAAGTGGGAGGTAATACCGGTGCTGGTGGTGCTGGTGGTACCATGAGCTCGATCAGACCAGGCTCAATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCACTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTCTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAAACATGTAGGCGTTATTGGACAAGAGGGGGAGCACTTAGAAATGTTCCAGTTGGTGGAGGCTGTCGTAGAAACAACAAAAAGAACAAGAGAAACCGTTCGAAATCTCCTACTTCAACAAACTCTCATGAGAAACAGACTTCATCATCAAGTGCAATCCCTTCTCAGCATGAACTAATTGGTCATCAATTACCGCAACAAATAACCAACTTACCCTTCATGACCTCTATGCAGAATCATCTCAATCGTTACGTTGTTGGAAACGTTAACATGGGTCTCGGTCACTCAGATCACATGGGGTTTCAAATTGGTGTTGGTAATAGTAACGGTAACTGTAACTCATCTTCTGTTTCAGTTTCTGCTTCTGCTGCTGCTATAGATGGTGGTGGTAGCGGCGGTGTTGGAGTTGAACAGTGGCGTAACTTGCAGCAATTTCCTTTCATGAACAATTTCGAATCAAATTCCGGTGTAAACAATTCATACCATTTTCAAGGAGGAACTATACAAGCTGCAGCAACTGAATTTGCTGGAGATCATATAGCTTCAAACTCTAGGGTTCTTGTTAATCAAGAGCCACCGGTTAAAAGAGAAGAAAACCGCGGTTTAAATTTATCAAGAACTTCTCTTGGTGTCTCCGAACATAATAACCAACAACAATACTATTCATGGAATGATTTATCAGGTTCTTCAACTACTCATCTCTTATAA 1026 0.4201 MVFSSIQGYVDPPNWHHQQPNHHHQQNGTDNTQLLPPLPPQVGGNTGAGGAGGTMSSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRNRSKSPTSTNSHEKQTSSSSAIPSQHELIGHQLPQQITNLPFMTSMQNHLNRYVVGNVNMGLGHSDHMGFQIGVGNSNGNCNSSSVSVSASAAAIDGGGSGGVGVEQWRNLQQFPFMNNFESNSGVNNSYHFQGGTIQAAATEFAGDHIASNSRVLVNQEPPVKREENRGLNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4974 341 MobiDBLite consensus disorder prediction 141 161 - -
Psa7g4974 341 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Psa7g4974 341 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Psa7g4974 341 MobiDBLite consensus disorder prediction 124 161 - -
Psa7g4974 341 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677|GO:0006355
Psa7g4974 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 337 IPR045174 GO:0003700|GO:0006355
Psa7g4974 341 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 4 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4974 Psa-Chr7 438726323 438728555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4974 1 133 C2C2-Dof Transcription Factor Family AT2G37590 61.538 4.05e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa7g4974 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4974 - - gmx:100801154 311.997