Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3130 ATGTCAGAGGTTAAAGACCCTGCGATAAAGCTATTTGGAAGGACAATTCCTCTTCCACTCATCATATCTAATGACTCTTCATCTTCCTCTCCCTCTTCTTCTCCGCCACAATTCATCTCTGCAATACAACAAGAAACTGAGGAATCGTCGAGGAAAGAACTCGCCACGGCACAAGATGATGATGCCTCGCAACAAACCGGGGAGGATTTAAAATCACTCGCAGCATCGTCGGCCATACTTGAGAATTCTCCTAAGACTCCCTCAGGCGAAACCGAGAATTCATTACCGAAAGCTTCTACAAATGGAGAACAAAGTGAGACTAGTGTTTCTGAAGATAAAACTTTAAAGAAACCGGACAAGATAATCCCGTGTCCGCGATGCAATAGCATGGACACCAAGTTCTGTTACTTCAACAATTACAATGTTAACCAGCCCCGACACTTTTGCAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAACGTTCCTGTTGGTGCTGGTCGCCGGAAGAACAAGACCTCACCTTCCGCGCATTATAGACACCTGATGATTCCAGAGGGAGTTAAGGTTCATTCCCCTAATGGATTACATGGTTCTGTCCTGGCCTTCGATTCAGATTCGCCTCTTTGTAATACCATGACTTCTGTATTGAAAATTGGCGAGAGGGTGCCAAATTGTGTACCTAATGGTTTTCATCAGGCAACTGGACCAAATACTTTTGTTTCCTATAGTGGAGAAGATGATCACTCGATTGGAGTTTCTGTTGCAACTTCAATTTCTTCCGAGAGGAAATGTCACACCGACACAAATGGATCAATGGATAAAAGACTGGAAGGCTTCCCTCCTCGATTGCAATATGTTCCAAGTCCCCTTTTGCCTTATCCATGGAATTCTGGAATTCCTCCTCCGACATTTTGTCCACCAAACTATCCATTGGCATTCTATCCTCCACCGGCATATTGGGGTTGCGTGCCGCCTCCATGGAATATACCATGTATCTCACCAAATAGTCCTTCTGTTAACCAAACTGACTCTCCCCAATATTCACCTACTTTGGGAAAACACTCAAGGGACGGAAACATCATTACCTCAGTAAACTCGCCTGATAAAGAACACAATTGTACCGAAAGCAGCGTTTTGACCCCGAAAACACTTAGATTCGACGACCCAAATGAAGCTGCAAAGAGTTCCTTATGGTCAAAGCTTGGGATCAGTAATGACAAAACCAATTCTCTCAATGGGGGAAGCATGTTCAATGCATTTCAATCCAAGGGAAAAGACACTAATCACTCGGCCGAAGCGTCACCGCTGATGTATGCCAACCCTGCAGCTTTGTCGCGGTCTCGTACCTTCCATGAAGGAACCTAA 1377 0.4466 MSEVKDPAIKLFGRTIPLPLIISNDSSSSSPSSSPPQFISAIQQETEESSRKELATAQDDDASQQTGEDLKSLAASSAILENSPKTPSGETENSLPKASTNGEQSETSVSEDKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKTSPSAHYRHLMIPEGVKVHSPNGLHGSVLAFDSDSPLCNTMTSVLKIGERVPNCVPNGFHQATGPNTFVSYSGEDDHSIGVSVATSISSERKCHTDTNGSMDKRLEGFPPRLQYVPSPLLPYPWNSGIPPPTFCPPNYPLAFYPPPAYWGCVPPPWNIPCISPNSPSVNQTDSPQYSPTLGKHSRDGNIITSVNSPDKEHNCTESSVLTPKTLRFDDPNEAAKSSLWSKLGISNDKTNSLNGGSMFNAFQSKGKDTNHSAEASPLMYANPAALSRSRTFHEGT* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3130 458 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677|GO:0006355
Psa7g3130 458 Pfam Dof domain, zinc finger 120 176 IPR003851 GO:0003677|GO:0006355
Psa7g3130 458 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 456 - -
Psa7g3130 458 PANTHER CYCLIC DOF FACTOR 2 1 456 IPR045174 GO:0003700|GO:0006355
Psa7g3130 458 MobiDBLite consensus disorder prediction 23 45 - -
Psa7g3130 458 MobiDBLite consensus disorder prediction 59 108 - -
Psa7g3130 458 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677|GO:0006355
Psa7g3130 458 MobiDBLite consensus disorder prediction 23 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3130 Psa-Chr7 227664165 227667613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3130 4 456 C2C2-Dof Transcription Factor Family AT5G39660 39.881 3.16e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa7g3130 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3130 - - gmx:100813315 527.324