Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3077 ATGGCAGTTTCTGAAGTAACCTCAACCCCAACCACTCAGATGGTTGGCAATGCTTTTGTGGAGCAGTATTACTCTATTCTGCACCGCGACCCGGATCAGGTTCACAGATTTTATCAAGATTCGAGTGTGTTGAGTCGGCCTGAGGAAGATGGTACCATGACATCTGTCACGACCACTGCGGAAATTGATAAAAAGATACAATCTCTCGATTACACAAGCTTTAGGGTAGAGGTTTTGAGTGCTGATGCTCAGCCCTCCTATAATAATGGGGTAATAGTTGTAGTGACTGGCTGTTTGACTGGAACTGACAATGTTAAACGCAAGTTTGCTCAATCATTTTTCCTAGCTCCACAGGACAAGGGCTTCTATGTTTTGAATGATGTTTTTAGATATGTTGACGAGTATAAGTCAGTTGATATTGAGTCTGTACCAGCAAATGATGCTGATGAAAGTGCTCCTCCATCAGAAGCTTTTACTCCAGAGCCCGAGGTTGTCCATGTTCCTGAAGAAATTCCACCCAGTCAAACTGTTATTGCTGATACTGACACTATCATCACCAAAGAAGTGACCCTACCACTGGAGAATGGAAAATTACCAGTTGTTGAATCTGTGATTCCTGTTAATCATGTTAAAGAGCCAATCCATCAAGAATTACCCCCAGTCACTGAGAAAGTTGCTTCTACTAATACACAGGAGGATACTCCTAAAAAGTCTTTTGCATCCATTGTGAATGCCTTGAAAGATAATTCTGCTCCTTTCCATTTGAGGGCTTCCCCTGCAAAACCCGCTGTGCAACCACCTCGTGTACACAGCAGCGTGCCTGCTCCTGAAGTACAAGCCCCCCCTAACGCCGACATTCCACTGGAAAAGAATAATGAGAATGCAGGTAAGGCTCATGCAATATTTGTTGCAAATTTGCCTATGAATGCAACAGTAGAGCAATTGGACCGGGTTTTCAAGAAATTCGGTTCCATTAAACGCGATGGTATTCAAGTTAGAAGTAACAAGGGATCCTGCTTTGGTTTTGTGGAATTTGAATCTGCTGCTTCATTGCAAAGTGCCCTAGAGGCTTCTCCTCCTGTTATGTTGGACAACCGCAGACTTTCCATTGAAGAAAGGCGAGCTAACAATGATAGGGTGCAATATTCATCAGGACGGAGTGGATACCGCAACGACCGAAATGACGGCTTCAGGGGTCGTGGCAACTTTGGCGGTGGCCGGGGTGGTGGAGGCAGCTTTAACGGAAGGAATGATTTTGAGAAGAGAGGCGATTTCTCCGGACGGCCACGAGGAGGCAATAATAATGGGCGCATCAATGGAGATGCTGTGCCAAGAAGTTATCAGAATGGTGGAAAAGCCCCTCGTCAACAAGCACCGGTGAAAGTTCAATAA 1392 0.4504 MAVSEVTSTPTTQMVGNAFVEQYYSILHRDPDQVHRFYQDSSVLSRPEEDGTMTSVTTTAEIDKKIQSLDYTSFRVEVLSADAQPSYNNGVIVVVTGCLTGTDNVKRKFAQSFFLAPQDKGFYVLNDVFRYVDEYKSVDIESVPANDADESAPPSEAFTPEPEVVHVPEEIPPSQTVIADTDTIITKEVTLPLENGKLPVVESVIPVNHVKEPIHQELPPVTEKVASTNTQEDTPKKSFASIVNALKDNSAPFHLRASPAKPAVQPPRVHSSVPAPEVQAPPNADIPLEKNNENAGKAHAIFVANLPMNATVEQLDRVFKKFGSIKRDGIQVRSNKGSCFGFVEFESAASLQSALEASPPVMLDNRRLSIEERRANNDRVQYSSGRSGYRNDRNDGFRGRGNFGGGRGGGGSFNGRNDFEKRGDFSGRPRGGNNNGRINGDAVPRSYQNGGKAPRQQAPVKVQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3077 463 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 449 IPR039539 -
Psa7g3077 463 CDD NTF2 13 133 IPR018222 -
Psa7g3077 463 Gene3D - 4 136 - -
Psa7g3077 463 Coils Coil 461 463 - -
Psa7g3077 463 SUPERFAMILY RNA-binding domain, RBD 300 402 IPR035979 GO:0003676
Psa7g3077 463 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Psa7g3077 463 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Psa7g3077 463 SUPERFAMILY NTF2-like 11 132 IPR032710 -
Psa7g3077 463 CDD RRM_SF 301 371 - -
Psa7g3077 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 385 IPR000504 GO:0003723
Psa7g3077 463 Gene3D - 284 452 IPR012677 -
Psa7g3077 463 PANTHER BNAA02G14660D PROTEIN 1 449 - -
Psa7g3077 463 SMART rrm1_1 300 371 IPR000504 GO:0003723
Psa7g3077 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 368 IPR000504 GO:0003723
Psa7g3077 463 MobiDBLite consensus disorder prediction 374 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3077 Psa-Chr7 224217511 224221567 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3077 7 224217511 224221567 Psa7g3077 7 224217511 224221567 ECH