Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2946 ATGAGAAAACCTAGCTGTGACATCAACAAGAACAAAGGAACCTGGTCCCAAGAAGAAGATCAGAAACTCATAGATTATATTAACAAACACGGTGAGGTTTGTTGGAGTACACTCCCTCAAGCTGCAGGTTTACTTCGATGTGGTAAAAGTTGTCGGCTGAGATGGATGAATTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAACTTCATGCACTTCTAGGCAACAGGTGGTCACTAATTGCTGGGAGATTGCCTGGACGTACTGATAATGAAGTGAAGAATTATTGGAACTCTCATATAAGAAAAAAGTTTATTAGCAAGGGTATTGATCAAAGTAATCATGGTTTAAACCATAAAATTCTTCCCCTTCAACACTCACTCATGTCTACTAGTTCAAAATTTTCTGGCTTGAAAGAGATTAGCAAGAATAAGGCTCAAGTTGAGAATTATGGCGAAGTCTCAAATGCTTCAAGTGGTGAAGTTATTGAATCATGTGCCCTATTGGATATAAACCTTGAACTCTCCCTATGA 561 0.385 MRKPSCDINKNKGTWSQEEDQKLIDYINKHGEVCWSTLPQAAGLLRCGKSCRLRWMNYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKFISKGIDQSNHGLNHKILPLQHSLMSTSSKFSGLKEISKNKAQVENYGEVSNASSGEVIESCALLDINLELSL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2946 186 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Psa7g2946 186 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Psa7g2946 186 PANTHER MYB-LIKE TRANSCRIPTIONAL FACTOR MYB76 2 184 - -
Psa7g2946 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Psa7g2946 186 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 184 - -
Psa7g2946 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Psa7g2946 186 SMART sant 11 61 IPR001005 -
Psa7g2946 186 SMART sant 64 112 IPR001005 -
Psa7g2946 186 Gene3D - 7 64 - -
Psa7g2946 186 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Psa7g2946 186 CDD SANT 67 110 IPR001005 -
Psa7g2946 186 CDD SANT 14 59 IPR001005 -
Psa7g2946 186 Gene3D - 67 131 - -
Psa7g2946 186 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Psa7g2946 186 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2946 Psa-Chr7 211025582 211026788 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g2946 Myb_DNA-binding 3.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2946 7 211025582 211026788 Psa7g2946 7 211025582 211026788 ECH