Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2013 ATGGTTCCTGTATGGCTACTCACCGTAACAGTAACAGTAGCTACTTTACTGTTAACAACACTAACACAAGCTCAACCAGAAGCAAATTTCAAATGCGCCACCGAAGCCACGTGTCGCAGTCTAACCGACTACGCTTCCGCCAACGCAACAACCTTAAAGGAAATCGAAACCCTGTTCGGCGTGAAACACTTCCTCGACCTCCTCGGAGCCAACAACCTCCCAACCGACACCAAAAACACTTACAAACTAAACGCCAGCCAAGTCATTAAGGTTCCGTTTCCCTGCAAATGCGGCAACGGAATCGGTAAATCCAACAATTTACCACGGTACAAAATAAAACCAGGTGACACGTTAAGCGAAATAGCGACGGTTCGTTTTGCCGGTTTGGTGAAGTATCAACAGATCCAAACCGCTAATAACATACCAGATGCTAACAATACCACGATCCAAACCGCTAATAACATACCAGATGCTAACAATATAACCGCCGGTGATACGCTTTGGATTCCTTTGCCTTGTAGCTGTGATAAGGTGGATGACAGCAGTGTTTTGCATTATGCACATGTTGTGGAAGCTGGTAATACCATTGATATCATTGCTCAAAAATATGGTACAACACCACAAACTCTACTCTCTATCAACGGTATTGATGATCCTAAAACACTTCAAGCCGGTCAAGTTCTAGATGTTCCTCTTCCAGTTTGTAAATCAAATGTTGGAAATAATTCCGTGGATTTTCCATTGCTTGTTCCAAATAGGACTTATTTCTATACTGCAAATGATTGTGTTAAATGTAAATGTGACTCTACTGGTAGTAATAACAACAGCAATTCTATGTTGCAATGCGAGGAGTCGAATATAAAACCGATAAATCATTGGTCGGTTTGTCCGTCTGCGAAATGCTCTGGGAATGTGTTGATTGGGAATACTACGTCTACTGATTCGTGTAATCGGACATTTTGTGATTACGCTGGTTATACTTCTCGCAATATCTCTACGGTTCTTGCAACTCAAAACACTTGTGCTGTGGCGCCAAGTGGTTCGAGCGGTTCGGGTTCGGGTTCAGGTGGTTCGGATTCAGGGGCATCTAGGAGTATCTTGAATGGCTGGGTTTGGAATAAGCTTCTTATTCTCATTCACTTCCTTCTGTTTTTTGTTTATCTTTTGTAG 1170 0.4265 MVPVWLLTVTVTVATLLLTTLTQAQPEANFKCATEATCRSLTDYASANATTLKEIETLFGVKHFLDLLGANNLPTDTKNTYKLNASQVIKVPFPCKCGNGIGKSNNLPRYKIKPGDTLSEIATVRFAGLVKYQQIQTANNIPDANNTTIQTANNIPDANNITAGDTLWIPLPCSCDKVDDSSVLHYAHVVEAGNTIDIIAQKYGTTPQTLLSINGIDDPKTLQAGQVLDVPLPVCKSNVGNNSVDFPLLVPNRTYFYTANDCVKCKCDSTGSNNNSNSMLQCEESNIKPINHWSVCPSAKCSGNVLIGNTTSTDSCNRTFCDYAGYTSRNISTVLATQNTCAVAPSGSSGSGSGSGGSDSGASRSILNGWVWNKLLILIHFLLFFVYLL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2013 389 CDD LysM 188 230 IPR018392 -
Psa7g2013 389 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 342 - -
Psa7g2013 389 Pfam LysM domain 188 231 IPR018392 -
Psa7g2013 389 Pfam LysM domain 110 170 IPR018392 -
Psa7g2013 389 ProSiteProfiles LysM domain profile. 108 169 IPR018392 -
Psa7g2013 389 CDD LysM 110 169 IPR018392 -
Psa7g2013 389 SUPERFAMILY LysM domain 186 232 IPR036779 -
Psa7g2013 389 Gene3D LysM domain 105 182 IPR036779 -
Psa7g2013 389 Gene3D LysM domain 183 239 IPR036779 -
Psa7g2013 389 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Psa7g2013 389 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 342 - -
Psa7g2013 389 SMART LysM_2 109 170 IPR018392 -
Psa7g2013 389 SMART LysM_2 187 231 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2013 Psa-Chr7 147817959 147819389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2013 6 333 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 43.675 4.65e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2013 - - cam:101506878 504.212