Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1124 ATGCAAAATCTACGGAATGCTGATGATGATGCAAAAAGATTTCTGGATGAAACAGAGAAAAGTTTTGAAGAAGCCCAAAAGCACATACAGGTTCTGAAGAGTGATATTGCAGGAAAAGATGCAGAGGTTGCACAAATGAAAGCTCATATTTCAGAGCTTAATTTACATGCTGAAACACAGGCAATGGAGTACAAGCAGAATGTCAAAGCATTGGAAGCGATGGTCGAGCAAGTCAAACCTGAGGGCATTTCCACGCCATCCACCAATGCTTTGTCAAACAAGTTTGAGAAGAACGCTCGCCAAGTCATTAAGGTTCAGTTTCCTTGCAAATGCGGCAACAAAACCGGTAAGTCCAACAATTTACCACGGTACAAAATAAAACCAGGTGACACGTTAAGCGAAATAGCGACGGTTCGTTTTGCCGGTTTGGTGAAGTATCAACAGATCCAAATCACGTTAAGCGAAATAGCGACGGTTCGTTTTGCCGGTTTGGTGAAGTATCAACAGATCCAAACCGCTAATAACATACCAGATGCTAACAATATAACCGCTGGTGATACGCTTTGGATTCCTTTGCCTTGTAGCTGTGATAAGGTGGATGACAGCAGTGTTTTGCATTATGCACATGTTGTGGAATCTGGTAATACCATTGATATCATTGCTCAAAAATATGGTACAACGCCACAAACTCTACTCTCTGTCAACGGTATTGATGATCCTAAAACACTTCAAGCCGGTCAAGTTCTAGATGTTCCTCGTCCAGTTTGTAAATCAAATGTTGGAAATAATTCCGTGGATTTTCCATTGCTTGTTCCAAATGGGACTTATTTCTATACTGTAAATGATTGTGTTAAATGTAAATGTGACTCTACTGGTAGTAATAACAACAACAATTCTATGTTGCAATGCGAGGAGTCGAATATAAAACCGATAAATCATTGGTCGGTTTGTCCGTCTGCGAATATGTCCTCGAGAATAAATCTGATAACAGCATCCTGTTGA 1002 0.4032 MQNLRNADDDAKRFLDETEKSFEEAQKHIQVLKSDIAGKDAEVAQMKAHISELNLHAETQAMEYKQNVKALEAMVEQVKPEGISTPSTNALSNKFEKNARQVIKVQFPCKCGNKTGKSNNLPRYKIKPGDTLSEIATVRFAGLVKYQQIQITLSEIATVRFAGLVKYQQIQTANNIPDANNITAGDTLWIPLPCSCDKVDDSSVLHYAHVVESGNTIDIIAQKYGTTPQTLLSVNGIDDPKTLQAGQVLDVPRPVCKSNVGNNSVDFPLLVPNGTYFYTVNDCVKCKCDSTGSNNNNNSMLQCEESNIKPINHWSVCPSANMSSRINLITASC* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1124 333 Pfam LysM domain 209 252 IPR018392 -
Psa7g1124 333 Pfam LysM domain 124 191 IPR018392 -
Psa7g1124 333 SUPERFAMILY LysM domain 207 252 IPR036779 -
Psa7g1124 333 Gene3D LysM domain 111 204 IPR036779 -
Psa7g1124 333 Gene3D LysM domain 205 260 IPR036779 -
Psa7g1124 333 CDD LysM 209 251 IPR018392 -
Psa7g1124 333 CDD LysM 124 190 IPR018392 -
Psa7g1124 333 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 62 151 - -
Psa7g1124 333 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 152 322 - -
Psa7g1124 333 Coils Coil 15 35 - -
Psa7g1124 333 ProSiteProfiles LysM domain profile. 140 190 IPR018392 -
Psa7g1124 333 SMART LysM_2 208 252 IPR018392 -
Psa7g1124 333 SMART LysM_2 123 191 IPR018392 -
Psa7g1124 333 Coils Coil 54 74 - -
Psa7g1124 333 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 62 151 - -
Psa7g1124 333 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 152 322 - -
Psa7g1124 333 ProSiteProfiles LysM domain profile. 207 251 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1124 Psa-Chr7 84493013 84494067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1124 98 333 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 42.194 4.48e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1124 - - cam:101506878 311.997