Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0245 ATGAATACCTTACCCTTCCTTGCATCCATATTCTTCACCATTGTTTTCTTCTCAACATCTTTGCCACTATTAAACTCTCAAAAAAATGACACATTTTCTACTTGCAACCAATCCTATTTCACCTGTGGGACAGACACAAATGTATCATTTCCTTTCTGGGGAGAAAACCGACCGAGTTTTTGCGGCAAAAATGAGTTCAAACTCACTTGCATGCATAATGAAAACACCTCTATTCAAATTGGTTCACAAAAATTCAATGTATTAAACATTAACCAAAATGCTTCTACCATGAGAATTGTTAGAACAGATCTTGTTAATGATATATGTTCTTCGAATTTCACCAACACTTCTTTGATTAGAACTCCCTTTAGTTTTCTTGCATCTGTACGAAACCTCACTATATTCTATGATTGTCCTATTGAGAGTAGTTCAGTTATGAAAAACATAAACACTTTTACATGTGGGAAAAATGGTAGCAATGAACATGTTTTCTATGTTGTCAATAATGAAACTCAGCTACAAAACCAGTTCTTAGGATTTCGGAACTGTCGCGTTAGTTTTCAAGTTGAAGTTTCTAAAGATGTTGTTTGGGATTCTGAGAGTGGAGTTCATATGTTGGAACAAGGTTTTGATGTGATGTATGGTGAAGGTGTAGGGTGGTCCTCTCAGTGTGAAGAGTGTAGAGAATCTGGAGGAACGTGTGGTACAAATCAGAATGATTCTTCTCAATTTTCTTGTTACTGTCCTTCTGGAAGTGGAACTCATGATGGTGCTAAGTGTTCTTCTAACAAAAGTAGAAAAAGGAACAAAGTGTTGAAGCTTGTTATAGGTTTCATAGCTACTGGAATGTTGTTACCTCTTATTGCTGTCATAATATGTCGAAATAAAGCGAAAATATGGAAGATTATATTGACACAGTTCAGCAAAATAACAAGGAATAATCAACATATAGAAGCTTTTCTTGAGAGTCAAGGACCTTTGAATCTAAAGAGATACAATTACTCTGATGTGAAGAAAATGACTGAATCTTTCAAGGTTAAACTCGGAGAAGGTGGTTACGGTTCGGTGTACAAAGGAAATATCAATGGTTGTTTCGTTGCTGTGAAAGTGTTGAATGAATCAAAAGGGTGTGGTGAAGATTTCATCAATGAAGTTGCTAGTATATGCAAAACATCACATGTTAATGTTGTCACACTTTTAGGATTTTGTCTCGATGGGACCAAGAAAGCTCTTATCTATGAGTTTATGTCGAATGGATCGCTCGAAAAGTATATTCATAATTCCAACAAAGAATCTGACAAGACCGAAAAAACTAAAACTAGTCCTAATCCGTCGTTGAGTTGGGAGAATTTGCACCAGATTGCGATAGGGATAGCGCGAGGACTCGAGTATTTGCATAAAGGATGCAATACTCGGATTCTACATTTTGATATTAAACCACATAACATTCTTCTGGACGAAACGTATCGTCCGAAGATATCGGATTTTGGACTTGCTAAACTAAGCACGAGGGACGAGAGCATTATTTCAATGTCAGATGCTAGAGGGACGGTCGGGTATGTAGCTCCTGAAGTTTTCAACAAAAGCTTTGGAGGAGTTTCGCATAAGTCTGATGTTTATAGTTACGGAATGATGTTGCTTGAAATGATTGGAGGACGGAAGAACGTTAACATTGTCGAAGCAACTAGTCAGTCGAGCGAATTATATTTTCCGCATTTGGTGATTTACAAGAAGCTCGAAGATGGGAATGATTTGGAACTTGACGACGAAGTAATGTCGAAGGAGGAAAATGAGATAGCTAAGAAATTGACTATGGTTGGTTTATGGTGCATTCAAACAATTCCAACTCATAGACCTACAATAAGTAGAGTGATTGATATGTTGGAAGGTACCATGGATTCTTTGGAAATGCCACCAAAACCTGTTATGTATTCTCCTCCAAGATCAATACCGGAATTTTCAACATCATCAAAATCTTTGGAAAGTTTCTCTAAGTAA 1998 0.3694 MNTLPFLASIFFTIVFFSTSLPLLNSQKNDTFSTCNQSYFTCGTDTNVSFPFWGENRPSFCGKNEFKLTCMHNENTSIQIGSQKFNVLNINQNASTMRIVRTDLVNDICSSNFTNTSLIRTPFSFLASVRNLTIFYDCPIESSSVMKNINTFTCGKNGSNEHVFYVVNNETQLQNQFLGFRNCRVSFQVEVSKDVVWDSESGVHMLEQGFDVMYGEGVGWSSQCEECRESGGTCGTNQNDSSQFSCYCPSGSGTHDGAKCSSNKSRKRNKVLKLVIGFIATGMLLPLIAVIICRNKAKIWKIILTQFSKITRNNQHIEAFLESQGPLNLKRYNYSDVKKMTESFKVKLGEGGYGSVYKGNINGCFVAVKVLNESKGCGEDFINEVASICKTSHVNVVTLLGFCLDGTKKALIYEFMSNGSLEKYIHNSNKESDKTEKTKTSPNPSLSWENLHQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTRDESIISMSDARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMIGGRKNVNIVEATSQSSELYFPHLVIYKKLEDGNDLELDDEVMSKEENEIAKKLTMVGLWCIQTIPTHRPTISRVIDMLEGTMDSLEMPPKPVMYSPPRSIPEFSTSSKSLESFSK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0245 665 ProSiteProfiles Protein kinase domain profile. 342 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g0245 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Psa7g0245 665 Pfam Protein kinase domain 345 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g0245 665 Pfam Wall-associated receptor kinase C-terminal 154 250 IPR032872 -
Psa7g0245 665 Gene3D Phosphorylase Kinase; domain 1 316 415 - -
Psa7g0245 665 SUPERFAMILY Protein kinase-like (PK-like) 322 629 IPR011009 -
Psa7g0245 665 SMART serkin_6 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g0245 665 ProSitePatterns Protein kinases ATP-binding region signature. 348 369 IPR017441 GO:0005524
Psa7g0245 665 Pfam Wall-associated receptor kinase galacturonan-binding 35 101 IPR025287 GO:0030247
Psa7g0245 665 Gene3D Transferase(Phosphotransferase) domain 1 416 638 - -
Psa7g0245 665 MobiDBLite consensus disorder prediction 645 665 - -
Psa7g0245 665 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 663 IPR045874 GO:0004672
Psa7g0245 665 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 5 663 - -
Psa7g0245 665 MobiDBLite consensus disorder prediction 649 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0245 Psa-Chr7 16421173 16425038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0245 9 658 Receptor kinase-like Gene Family AT5G38260 38.788 1.27e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa7g0245 Pkinase 8.9e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0245 7 16421173 16425038 Psa7g0245 7 16421173 16425038 ECH