Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0238 ATGCAAACTCCATTTTCTACTCATATGAATAATCTCTTATTCAATTGTTTCATTGCATATTTTCTCTTCTTTTCTCTCTTGTTTGTGCATGGTAAAGAATTATCATGCAATCAAACACCATACCCTCATGTTTGCAACCATTACATTGGAACCACTAATACACTATCAACCATACATTCTTCTTCATTCCATGATATTGCCATTAAGGTTACCATGGACCAAGCTATTGAAGCATACAAACTTGTCTCAATCATGGATTTGAATAATTTCAAAGACAATAGAGCCAAGTCTGCATGGGAAGATTGTTTAGAGCTTTATGAGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAACAATTTCAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGCCAGAATGGTTTCATTGATTTCAATCTTCCTTCCCACTTAAACTACTTCCCTTCCATCTTAACCAACTTCACTAAATTGCTTAGCAATTCATTGTCCATTAGCAACACTCTAGCTTCTTCATCCTCATCGTCATCCTCAAATCCGAAACAAAACGGAGGTAGAAGGTTGTTATCAGAAGCATTTCCCCATTGGCTTTCAGGTTCAGATAGGAAACTTCTGCAGACAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGGAACTATAAGACAATCTCTGAGGGTGTAGCTGCTGCTAAGGGAAGTGGAAAAGGAAGAGTTGTAATTCATGTGAAAGCAGGTGTTTATAAAGAAAATATTGATATAAAGAAGACAGTGAAGAATATAATGATATTTGGAGATGGAATAGATTCCACCATTGTTACTGGTAATCATAACGCTCAAGATGGTTCTACTACTTTCCGTTCGGCAACTTTTGCTGTTATGGGAGATGGTTTCATAGCAAAAGATATGACCTTCGAGAATACTGCCGGACCACAAAAACACCAGGCGGTGGCTCTCCGTTCCGGCGCCGATCACTCCGTTTTCTACCGTTGCTCCTTCAAAGGCTATCAGGATACTCTATACGTCTATGCCAACCGTCAATTCTACCGTGACTGTAACATCTACGGAACAGTCGATTTCATCTTTGGCAACGCAGTTACAGTTCTTCAAAACTGCAATATCTTAGTTAGAAAACCTATGGGCAACCAACAGAACACCGTAACGGCACAGGGAAGAACAGATCCAAACGAGAATACCGGAATAGTAATCCATAACTGCCGTATAACCGCTGCTGGTGATTTGAAACCATATCAAAATTCAGTGAAAAGTTATCTAGGAAGACCGTGGCAGAAGTATTCAAGAACGGTTGTAATGAAAAGTAACATTGATGGTGTTATAAACTCTCAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTCTGAGTACACTTTATTATGCAGAATATATGAATGTTGGTGATGGTGCTAATACTAATGGGAGAGTAAACTGGTCTGGTTTTCATGTAATTACAAATCCATCAGAAGCTGTTAAGTTCTGTGTTGGTAATTTCTTGGCTGGTGAATCTTGGATATCTGGTGTGCCGTTTGATGCAGGTTTATGA 1587 0.3907 MQTPFSTHMNNLLFNCFIAYFLFFSLLFVHGKELSCNQTPYPHVCNHYIGTTNTLSTIHSSSFHDIAIKVTMDQAIEAYKLVSIMDLNNFKDNRAKSAWEDCLELYEDTIYQLNRSINSNNFNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSILTNFTKLLSNSLSISNTLASSSSSSSSNPKQNGGRRLLSEAFPHWLSGSDRKLLQTTPSADIVVAQDGSGNYKTISEGVAAAKGSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGIDSTIVTGNHNAQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCNIYGTVDFIFGNAVTVLQNCNILVRKPMGNQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKPYQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYAEYMNVGDGANTNGRVNWSGFHVITNPSEAVKFCVGNFLAGESWISGVPFDAGL* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0238 528 Gene3D - 213 528 IPR012334 -
Psa7g0238 528 ProSitePatterns Pectinesterase signature 1. 244 263 IPR018040 -
Psa7g0238 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 179 IPR035513 -
Psa7g0238 528 SUPERFAMILY Pectin lyase-like 214 522 IPR011050 -
Psa7g0238 528 PANTHER PECTINESTERASE 27 527 - -
Psa7g0238 528 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Psa7g0238 528 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857
Psa7g0238 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 176 IPR035513 -
Psa7g0238 528 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 176 IPR006501 GO:0004857
Psa7g0238 528 Pfam Pectinesterase 219 515 IPR000070 GO:0030599|GO:0042545
Psa7g0238 528 SMART PMEI_2 24 172 IPR006501 GO:0004857
Psa7g0238 528 CDD PMEI-like_3 34 177 - -
Psa7g0238 528 SMART complete 252 433 IPR006633 -
Psa7g0238 528 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 27 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0238 Psa-Chr7 15992719 15994983 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0238 10 528 Carbohydrate Esterase AT1G23200 51.805 0.0 525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0238 7 15992719 15994983 Psa7g0238 7 15992719 15994983 ECH