Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5293 ATGAAAAACAACAAAATATCAATTCTTCTAGTTCTTATCTTTTTCATCACTTCATCTTTTTGTTCCGATCCAGATCCAGTTCTGGATTTCTGCATAGCCAAACCACAAGAAAGTTGCAAAAACTCATCCACAGCAACCATTGAAGACTTCACTTTCTCCGGCATAAAACTTCCCGGAAACTTCAAACAAACCGGATTTTCATCCCTGGGAGTGAATTCAAACGTGTTTCCAGGTTTGAACACTCTTGGAGTTTCGTTTGTGAGAGCTGATTTTGACGTTGGCGGTGTCAATGTCCCTCACTTTCATCCAAGAGCAACAGAAGTTGCTATTGTGATGGAGGGGAAAATCTATTCGGGATTTGTTGATACTAAGAACAAGATTTTCGCTAAGGTTTTGGAGAAAGGTGAGGTGATGGTTTTTCCAAGAGGACTTGTGCATTTTCAGATGAATGTTGGTGATGTTCCTGCTACCATTTTTGGGAGCTTTGATAGCCAGAATCCTGGTTTGATGAAAATTCCTAATGTTGTCTTTGGATCTGAGATTAAAGATGAGCTTTTGGAAAAAGCTTTTGGATTTAATTCTAAGGAGCTTTCTAAGTTGAAGAAGAGGTTTTCTCCTACAACCTAA 627 0.3892 MKNNKISILLVLIFFITSSFCSDPDPVLDFCIAKPQESCKNSSTATIEDFTFSGIKLPGNFKQTGFSSLGVNSNVFPGLNTLGVSFVRADFDVGGVNVPHFHPRATEVAIVMEGKIYSGFVDTKNKIFAKVLEKGEVMVFPRGLVHFQMNVGDVPATIFGSFDSQNPGLMKIPNVVFGSEIKDELLEKAFGFNSKELSKLKKRFSPTT* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5293 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Psa6g5293 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Psa6g5293 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Psa6g5293 208 Gene3D Jelly Rolls 22 207 IPR014710 -
Psa6g5293 208 PANTHER GERMIN-LIKE PROTEIN 5 205 - -
Psa6g5293 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 205 - -
Psa6g5293 208 Pfam Cupin 58 196 IPR006045 -
Psa6g5293 208 SMART Cupin_1_3 53 198 IPR006045 -
Psa6g5293 208 CDD cupin_OxOx 23 204 - -
Psa6g5293 208 SUPERFAMILY RmlC-like cupins 49 204 IPR011051 -
Psa6g5293 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5293 Psa-Chr6 465167297 465168623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5293 7 204 Miscellaneous Gene Families AT5G39160 41.827 2.08e-51 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5293 6 465167297 465168623 Psa6g5293 6 465167297 465168623 ECH