Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5256 ATGGGTCATTTTTTGTTCAACTTCATCCTCTTCATCTTTCTATTATCATGGACTTCTCCATTAGCACATTCTAGAAACACACCACACAATGCCAAAACAACATTGCTTAATGTTGTTTCTTCCATTCAAAAAACATATCAAGTTCTCAACTTTAACCCAAACCTTAAACAACAACAAAAGGGTTCTTCTGTTTTTTCTTCTTCTTCGTCGTCACATTTTTCTATGCAACTTCATTCAAGAGCTTCCATTCATCAACCTTCACATGCTGACTACAAATCTCTAACATTATCCAGACTCGACCTCGACTCAGTCCGAGTCAACTCCATACTCACTCAGCTAGATCCAAATTTCAACCCAGAGAAGCTTTCCGGACCCATTATCTCCGGAACGAGTCAAGGAAGCGGCGAGTATTTCTCCAGAATCGGAATCGGTGAGCCACCGAGTCAAGCTTACGTGGTACTCGACACAGGCAGTGACATAAGCTGGGTCCAATGCGCACCTTGCGCCGACTGCTACCGGCAAGCCGATCCTATTTTTGAGCCGGCTTCATCGGCTTCTTACACGCCGATCACTTGTAAAGCCAATCAATGCAAATGGCTCGACCAATCTCAGTGTCACAACGGTAACTGCCTCTATGAAGTTTCCTACGGCGACGGCTCATACACCGTCGGTGACTTCGTTACAGAGACGGTTACAATCGGAGCTACTTCCGTTCGGAATATAGCCATCGGCTGCGGTCATAATAACGAAGGCTTATTCGTCGGTGCAGCCGGTTTACTCGGCTTAGGTGGCGGCCCGCTTTCTTTTCCGGCTCAGCTCAATTCGACGTCGTTTTCATACTGTCTCGTCGATCGTGACTCCGACTTAGTCTCAACGCTAGAATTCGACTCTCCGTTTTCTCGTGACGCCGTCACCGCATCGTTAAAGCGTAATCCCGAGATGAACACGTTTTACTTTGTTGGACTCGTCGGAATAAGCGTCGGCGGGGTGTTACTTCCGATTCCGGAAACTAGTTTCATGGTGGATTCTACGGAGAGTGGAGGTGTCATTGTGGATTCCGGCACGGCGGTGACACGGTTGCAGAGCGATGTGTATAGTGTCGTACGTGACGCGTTTGTGAGGGGGACGAGGGATTTACCGGCAGCGAACGACATGTCGTTGTTTGATACTTGCTACGATTTGTCGTCGAGGTCAAGCGTGGAGGTTCCGACGGTGGCGTTTCATTTTGGGGAAGGGAAAGTGTTGGTGCTACCGGCGAAGAATTACCTGGTACCGGTTGATTCGGTGGGGACGTTTTGTTTTGCGTTTGCTCCAACGACGTCGTCTTTGTCGATTATTGGGAATATTCAGCAGCAAGGGACACGTGTGAGTTTTGACCTGGTGAACTCGGTAATTGGATTTTCACCCAACAGTTGTTAA 1419 0.4806 MGHFLFNFILFIFLLSWTSPLAHSRNTPHNAKTTLLNVVSSIQKTYQVLNFNPNLKQQQKGSSVFSSSSSSHFSMQLHSRASIHQPSHADYKSLTLSRLDLDSVRVNSILTQLDPNFNPEKLSGPIISGTSQGSGEYFSRIGIGEPPSQAYVVLDTGSDISWVQCAPCADCYRQADPIFEPASSASYTPITCKANQCKWLDQSQCHNGNCLYEVSYGDGSYTVGDFVTETVTIGATSVRNIAIGCGHNNEGLFVGAAGLLGLGGGPLSFPAQLNSTSFSYCLVDRDSDLVSTLEFDSPFSRDAVTASLKRNPEMNTFYFVGLVGISVGGVLLPIPETSFMVDSTESGGVIVDSGTAVTRLQSDVYSVVRDAFVRGTRDLPAANDMSLFDTCYDLSSRSSVEVPTVAFHFGEGKVLVLPAKNYLVPVDSVGTFCFAFAPTTSSLSIIGNIQQQGTRVSFDLVNSVIGFSPNSC* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5256 472 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 152 163 IPR001969 GO:0004190|GO:0006508
Psa6g5256 472 Gene3D Acid Proteases 296 472 IPR021109 -
Psa6g5256 472 Gene3D Acid Proteases 112 294 IPR021109 -
Psa6g5256 472 PANTHER ASPARTYL PROTEASES 13 472 IPR001461 GO:0004190|GO:0006508
Psa6g5256 472 Pfam Xylanase inhibitor N-terminal 137 289 IPR032861 -
Psa6g5256 472 ProSiteProfiles Peptidase family A1 domain profile. 137 468 IPR033121 -
Psa6g5256 472 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 472 - -
Psa6g5256 472 SUPERFAMILY Acid proteases 131 472 IPR021109 -
Psa6g5256 472 Pfam Xylanase inhibitor C-terminal 318 468 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5256 Psa-Chr6 462198457 462200779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5256 127 472 Miscellaneous Gene Families AT1G77480 25.849 3.26e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5256 6 462198457 462200779 Psa6g5256 6 462198457 462200779 ECH