Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5254 ATGCAAAGGCTCAACGCAACTACTGAATCATCCTCACCACTCTATTCTCATTCTTCATTCTTGTTGAGGGGAGATGAATCCAATCTTAATCCAACACGTTTCTTTGATCCTCATCTTTCATTTCAACAACACTATGCTGTTGATTTAAGTTCTATGTTTGGTGCAAAGTCTAACAATGTTGCTGTTGCAGCAAGTAACTTGCAGTATGGAACATTCAACACTAATTTTGGTTCAGCTTCTTCTTCAGGCATGGGAGATAACACTCAAAAGACTGAAGAAACTTCAACAGAAGACATTGATGCCGATGATAAAAACAATCAATGTTTTTCTGCTGTGTCTTGGTGCAATGGTGTTGAGAATGAGGCTCTTGTGGTTGTTGATTCCAAGGATCAATGTAGGAATAAGGAAAAGTCTGAAGAGCAGAAGAATCTTCGGAGGCTGGTTCAGAATCGCGAGGCTGCGAGGAAAAGTCGATTAAGGAAAAAGGCATACGTGCAACAATTGGAGAGCAGTCGACTTAAGCTTGCTCAAATAGAGCAAGAGCTTCAACAAGTACATCAGCAGAGCGTATTCGTTGCGACCGGAGTTGCAGCGGATCATGGTCATTCAGTCGTTGGAAACAGTAATTCAGGCGCGTTAGCATTTGATATGGACTATGCGCGTTGGGTCGACGAGCATCAACGACTAATCAATGGCATAAGATCAGCTTTAAATTCACAAATGGGTGATAATGAACTTCATCTTCTTGTTGATGGTGTCATTACGCATTATGATGAGTTATACCGATTGAAGCGCGTAGGTGCGAAAGCCGACGTATTTCACATACTTTCTGGTTTGTGGATTACGCCTGCAGAAAGATGCTTCATGTGGCTCGGTGGACACCGTTCGTCGGAACTTCTCAAGATAGTTAGAAACCATATCGATCCTTTAACGGATCAGCAGTTGATGGGGATCTACAATCTGCAGCATTCTTCTCAACAAGCCGAGGATGCATTATCTCAAGGCATGGAAGCATTGCAACAATCTCTTTCCGAAACGCTTTCGTCCACCACCAACGGATCGGGAAATGTCGCCGAGTATATGGGCCAAATGGCCATTGCAATGGCCAAGCTAGCCACACTAGAGACTTTCATTCATCAGGCCGATCTCTTGAGGCAACAAACACTCCAACAGTTGCGTCGAATTTTGACCGCGCATCAAGCTGCTCGCGCTCTCCTCGTCATAAATGACTACATTTTGCGAATTCGAGCACTGAATTCATTATGGTTAGCATGTCCTAAAGAATAG 1287 0.4359 MQRLNATTESSSPLYSHSSFLLRGDESNLNPTRFFDPHLSFQQHYAVDLSSMFGAKSNNVAVAASNLQYGTFNTNFGSASSSGMGDNTQKTEETSTEDIDADDKNNQCFSAVSWCNGVENEALVVVDSKDQCRNKEKSEEQKNLRRLVQNREAARKSRLRKKAYVQQLESSRLKLAQIEQELQQVHQQSVFVATGVAADHGHSVVGNSNSGALAFDMDYARWVDEHQRLINGIRSALNSQMGDNELHLLVDGVITHYDELYRLKRVGAKADVFHILSGLWITPAERCFMWLGGHRSSELLKIVRNHIDPLTDQQLMGIYNLQHSSQQAEDALSQGMEALQQSLSETLSSTTNGSGNVAEYMGQMAIAMAKLATLETFIHQADLLRQQTLQQLRRILTAHQAARALLVINDYILRIRALNSLWLACPKE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5254 428 Coils Coil 161 188 - -
Psa6g5254 428 ProSiteProfiles DOG1 domain profile. 212 425 IPR025422 GO:0006351|GO:0043565
Psa6g5254 428 Gene3D - 142 190 - -
Psa6g5254 428 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 184 IPR004827 GO:0003700|GO:0006355
Psa6g5254 428 PANTHER TRANSCRIPTION FACTOR TGA9 39 428 - -
Psa6g5254 428 Pfam bZIP transcription factor 139 172 IPR004827 GO:0003700|GO:0006355
Psa6g5254 428 SMART brlzneu 138 198 IPR004827 GO:0003700|GO:0006355
Psa6g5254 428 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 145 160 IPR004827 GO:0003700|GO:0006355
Psa6g5254 428 Pfam Seed dormancy control 231 304 IPR025422 GO:0006351|GO:0043565
Psa6g5254 428 SUPERFAMILY Leucine zipper domain 142 186 IPR046347 GO:0003700|GO:0006355
Psa6g5254 428 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 39 428 - -
Psa6g5254 428 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5254 Psa-Chr6 462172988 462175960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5254 1 428 bZIP Transcription Factor Family AT1G68640 51.178 1.40e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa6g5254 DOG1 7.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5254 6 462172988 462175960 Psa6g5254 6 462172988 462175960 ECH