Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5246 ATGCCAGGGAATTCTCCTTTGCATGATGGATACAGAAGTCGATCAAGATCAATTGGCCATACAAGAGACAGGTCTCCTTCTCGCAGTGCTGTAGAAGAGTATGTCCATCCCAATAGCAGGCACTCCAGGGAAAAGGGTTCCCTTTATTATACTAGCAGACATAAGACTGACTATGACCTTGATGAGGAAAGAGTGAGTGCATACAGAAGGGAGCATCGTCACGGCAGTAAGGATTTGGTGGAGGGTGATAAACAGGAACACAGTACCAGGTATCAAAGTCGGGAGGCCCGGGATAGGGATAGAGCTACCTACAGGAGTAGGGACAGAGATGTGGATAGAGACTTGCACAGAGAAAAGAAGGGAGAGGAAACAAATAACTATAAGGAAGTTGATTGGATGCGTAGAAGGGAGAAAGAACGTGGAAGGAGCCACGATAGACCTAGAAGGGACATTGAAAAAGATAGGAGCAGGGAAAGAGATGAGGGTAGGGATAGGAGAAGAGAAAAGGAAAGAGATAGGAGCAGAGACACAGTTTATGAGAGGGATAGGAGAAGGGAAATGGAAAGAGATATGAGCAAGGACAGAACAAGGGGTGGTGAGAGAGATAGAGACTGGAAGAGTGAATGGGATTATAGGAACCGGGAAAGGGATAGCATTAAGGAGAGGGAGAGACGAGATGATAGATATCGACACAATGACAAAGATGCTCCTTATGGTAAAGATAAGCATATGCGTCGCGAGGATGGCAATGACAGTGGAGATAGATATAAGAAACATTCAAGATATGAAGAAAATGGACACCACACAGATAGAAAGAGGAACTATACCATGGAAGAGGATGGAAGGAAACTAAAAGGTGAGATTGAACAAGACGATGTAGACGAGGATACATTGCAACTACCCGAGCAAGAAGAGGAAGATCTGAACAGAATAAAAGAGGAGAGTAGAAGAAGACGGGAAGCAATAATGGAAAAATACAAAAAGCAGAATCAGAAAATTGAACAAGCAGCTGGAAATGAAGGAAAAGGCAAGGATGTGGAGATTCATACTGACATTTTTAAAGCAGTTGATGGTAAGAGTGATGATGTTGATAATGTGGAACCATCATTTTCTGTTGGGAAATCTCCACCGGAAAATGTAAATGTCAGATCAGAGAAGGTACCTGGTGCTGGGGGCCTAGGCGAGGGTACTCCTAAGAGTGAGAGGTCAGCTGACAAGTATTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCGGGAAAAGGAGATGGATTATTAATTGAAAGGGTTGGCCTGCATGACAACTGGGATGATGCAGAGGGCTATTACAGTTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTAACTGCTGCACACGGGAAGGGTGTCTTTTCAACAGTTGTACGAGCTAAGAATCTAAAAACTGGTAATGGTGAGCCAGATGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAGTTGGTCATTTTAAAGAAATTAGTAGGTGCAGATCCGGATGATAAGCGTCACTGTGTTCGTTTCCTTTCAAGCTTTAAGTATAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAAGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTCTGCACTGTGATATAAAGCCTGACAATATGTTGGTGAATGAAGCCAAAAATGTTTTAAAGCTTTGTGATTTTGGGAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCGTATCTCGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGATTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAACTGTATACAGGGAAGGTTCTTTTTCCAGGGCTCACAAACAACGACATGCTACGGCTTCACATGGAATTGAAGGGCCCCTTTCCAAAAAAGATGCTCCGAAAGGGAGCATTTACTGAACAACATTATGACCAGGACCTGAGTTTTCATTCCACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGATGATTCTTAACATAAAGGCGAAAGATATAGGAACGATCATCACTGGCTCTCCTGGGGAGGATCCAAAAATGTTGGCCAATTTTAAAGATCTTCTAGATAAAATTTTTGTCTTGGATCCGGACAAGAGATTGACAGTCTCACAAGCACTGAACCACCCATTTATCACTGGCAAGTGA 2331 0.4217 MPGNSPLHDGYRSRSRSIGHTRDRSPSRSAVEEYVHPNSRHSREKGSLYYTSRHKTDYDLDEERVSAYRREHRHGSKDLVEGDKQEHSTRYQSREARDRDRATYRSRDRDVDRDLHREKKGEETNNYKEVDWMRRREKERGRSHDRPRRDIEKDRSRERDEGRDRRREKERDRSRDTVYERDRRREMERDMSKDRTRGGERDRDWKSEWDYRNRERDSIKERERRDDRYRHNDKDAPYGKDKHMRREDGNDSGDRYKKHSRYEENGHHTDRKRNYTMEEDGRKLKGEIEQDDVDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQNQKIEQAAGNEGKGKDVEIHTDIFKAVDGKSDDVDNVEPSFSVGKSPPENVNVRSEKVPGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDQDLSFHSTEEDPVTKKTIKRMILNIKAKDIGTIITGSPGEDPKMLANFKDLLDKIFVLDPDKRLTVSQALNHPFITGK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5246 776 PANTHER DUAL SPECIFICITY PROTEIN KINASE 136 776 - -
Psa6g5246 776 Gene3D Phosphorylase Kinase; domain 1 429 517 - -
Psa6g5246 776 ProSiteProfiles Protein kinase domain profile. 458 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5246 776 MobiDBLite consensus disorder prediction 1 316 - -
Psa6g5246 776 SMART serkin_6 458 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5246 776 SUPERFAMILY Protein kinase-like (PK-like) 445 775 IPR011009 -
Psa6g5246 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Psa6g5246 776 CDD STKc_PRP4 457 773 IPR044092 GO:0004674|GO:0006468|GO:0045292
Psa6g5246 776 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 136 776 - -
Psa6g5246 776 Coils Coil 312 339 - -
Psa6g5246 776 Pfam Protein kinase domain 460 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5246 776 Gene3D Transferase(Phosphotransferase) domain 1 518 774 - -
Psa6g5246 776 MobiDBLite consensus disorder prediction 13 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5246 Psa-Chr6 461406461 461416746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5246 465 770 Core Cell Cycle Gene Families AT1G66750 30.599 4.72e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Psa6g5246 Pkinase 3.8e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5246 6 461406461 461416746 Psa6g5246 6 461406461 461416746 ECH