Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5239 ATGAAGGTTTTTGTGAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTGACGCCACAAGACACGATTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGACACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTCTTGTAATTATGCTTTCAAAGAATAAGACTAAATCTGGTGAAGGGTCTACTGCTTCAAATGCTCCTCCAGCAAAGGCCCCACAAACGAGTTCTGCTCCTACTTCAACCCCCACAGTGTCTGTATCACCTCAAGCTCCCGCTGCTGTTGCCACACAACCTGCATCTGTTGCTGCACCTTCTCCAGCTCCAGCTCCAGCTCCTACTCCTGCTCCCACTCTTGCTCCCACTCCTGCTCCTATATCTTCAGCAACTGCTACGGAAGGTTCTGATGTTTATGGGCAGGCGGCATCCAATCTGGTTGCTGGTAGCAACTTGGAGGAAACAGTTCAGCAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTATTCGTGCTCTTCGAGCCGCCTTCAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCTGGTATCCCTGAACAAGCTGAAGCTCCAGCAGTATCCCAAGTGCCTGCAATTGCGCAGCCTGCGAGTCCTGCAGCTGCAGCTGCAGCTCCACAAGCAGCACAGCCTGCTCCTGTTACATCTAGTGGACCTAATGCTAATCCTCTAGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTGCTGGTGCTGCCGGTGCCGGCTCTCTGGATTTTCTACGCAACAGTCAGCAATTCCAAGCTCTGCGAGCTATGGTGCAGGCAAACCCACAAATATTGCAGCCCATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGACTTTCTTCGCCTGATTAACGAACCCATGGAAGGTGGCGAAGGGAACCTTTTGGGACAAATGGCTGGTGGCATGCCACAAGCAGTAACAGTCACACCCGAGGAGCGCCAAGCTATTGAACGGCTTGAAGCAATGGGTTTCGACCGTGCTATAGTATTGGAGGTGTACTTCGCCTGTAACAAAAATGAAGAATTGGCGGCCAACTACCTTTTAGACCACATGCATGAGTTTGACGAACAATGA 1227 0.4808 MKVFVKTLKGTHFEIEVTPQDTISEVKKNIETVQGVDVYPAAQQMLIHQGKVLKDDTTLEENKVAENSFLVIMLSKNKTKSGEGSTASNAPPAKAPQTSSAPTSTPTVSVSPQAPAAVATQPASVAAPSPAPAPAPTPAPTLAPTPAPISSATATEGSDVYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAVSQVPAIAQPASPAAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNLLGQMAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5239 408 MobiDBLite consensus disorder prediction 81 137 - -
Psa6g5239 408 Gene3D - 1 77 - -
Psa6g5239 408 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Psa6g5239 408 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Psa6g5239 408 MobiDBLite consensus disorder prediction 81 118 - -
Psa6g5239 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 172 215 IPR015940 -
Psa6g5239 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 360 401 IPR015940 -
Psa6g5239 408 Pfam UBA/TS-N domain 174 212 IPR015940 -
Psa6g5239 408 Pfam UBA/TS-N domain 363 398 IPR015940 -
Psa6g5239 408 TIGRFAM rad23: UV excision repair protein Rad23 1 406 IPR004806 GO:0006289
Psa6g5239 408 CDD UBA1_Rad23_plant 168 217 - -
Psa6g5239 408 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 407 - -
Psa6g5239 408 SUPERFAMILY XPC-binding domain 279 344 IPR036353 GO:0003684|GO:0006289|GO:0043161
Psa6g5239 408 SMART CBM 280 323 IPR006636 -
Psa6g5239 408 Gene3D - 355 402 - -
Psa6g5239 408 Gene3D - 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Psa6g5239 408 PRINTS DNA repair protein Rad23 signature 308 330 IPR004806 GO:0006289
Psa6g5239 408 PRINTS DNA repair protein Rad23 signature 357 373 IPR004806 GO:0006289
Psa6g5239 408 PRINTS DNA repair protein Rad23 signature 374 388 IPR004806 GO:0006289
Psa6g5239 408 PRINTS DNA repair protein Rad23 signature 389 404 IPR004806 GO:0006289
Psa6g5239 408 SMART ubq_7 1 75 IPR000626 GO:0005515
Psa6g5239 408 Pfam XPC-binding domain 282 337 IPR015360 GO:0003684|GO:0006289|GO:0043161
Psa6g5239 408 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Psa6g5239 408 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 407 - -
Psa6g5239 408 Gene3D - 167 217 - -
Psa6g5239 408 SUPERFAMILY UBA-like 171 224 IPR009060 GO:0005515
Psa6g5239 408 SUPERFAMILY UBA-like 343 406 IPR009060 GO:0005515
Psa6g5239 408 CDD Ubl_Rad23 1 74 - -
Psa6g5239 408 SMART uba_6 174 214 IPR015940 -
Psa6g5239 408 SMART uba_6 363 400 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5239 Psa-Chr6 461115394 461121413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5239 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 3.73e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5239 6 461115394 461121413 Psa6g5239 6 461115394 461121413 ECH