Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5228 ATGACTTGTTCAAGTGAAAACTTAGCAAAAGCGGTTGGAGGAAAAACCGCTAGAGCTTGTGATAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCGGATGATGCTTTTCTCTGTCAAGGCTGTGATTCTTCGGTTCATTCTGCTAATTCCTTGGCTAGAAGACATGAAAGAGTTCGTTTGAAAACGGCTTCATATAAACCAGTTGGTGATAATAATGATAATAATAATAATGGATCCATCAATTCTGGTCCATTTTCTGGCTTTACCAAGAAAGCTAGAACACCGAGACAGGGGAAACAGAAGAATAATATTAATGTTGATCTTAATGTTAATGTTAATGTTAATGTTAATGTTGATGTTAATAATCCGTTTCATCTTGTGCCGGAATTGGGATTGGATGAAGTTCAATCGGGTTCGAATGAAGAAAACGAGGAGCAGTTGCTTTACAGGGTGCCGATTTTCGATCCTTTTGTTGCTGAATTATGTACTAGTTCTCCTTCGGTTGGTTCAACCGAAGGAGGACTAGCTGTGATAAGTGGTGTTTCTGCTTTCGCTTCTGATAGAAGCGAAAGCAGAACTCGTTTGGGTGGTGGTGATAGTAATTATGAGATGGAAGGCTTTCACGGGCTTCTTCCATCTGATATTGAATTAGCTGAATTTGCAGCGGATGTCGAGAGTTTATTGGGTCGGGGGTTGGAAAACGAGTGTATGGGAATGGAAGAGCTGGGGTTGATTGATGCGAAATATGAGGATGAGGAATGGGAGTGTAGTGGGAAAGTGAAGGAAGAAGGTGGAGAGATTCATGAAGTTGTTGAGGGAGATGATAATACAAAGGATATGGGAAAAGAATCTTCGTTTGAGTTGAATTTTGATTATGAAACATGTGAAGAGGTTAAGGAAAAGGGTGGTTTGGATATAGAACAAGATGAAAATAAAGATTGCAATAAGGGGAAAAGGAAAATATCTTTACAGTTAGATTATGATGCAGTAATCATTGCATGGGATGGCCAAAAATGTCCATGGACTAATGGTGACAAGCCAAATTTGGACATTGATGAGACCTTGTCTGATTTCATGGGGATTTGTGGAACGGAGATTCAATATCCTTATGGTGAATTTGGTGGATATGGTTGTAATCAAGTGATGGTAGATGGAGGTAGAGAGGCAAGGGTTTCAAGGTACAGAGAGAAGAGAAGAACAAGGTTGTTTTCGAAGAAAATAAGGTACGAGGTTAGGAAGTTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGGTTTGTGAAGAGGACTTCTTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA 1332 0.3971 MTCSSENLAKAVGGKTARACDSCITKRARWYCAADDAFLCQGCDSSVHSANSLARRHERVRLKTASYKPVGDNNDNNNNGSINSGPFSGFTKKARTPRQGKQKNNINVDLNVNVNVNVNVDVNNPFHLVPELGLDEVQSGSNEENEEQLLYRVPIFDPFVAELCTSSPSVGSTEGGLAVISGVSAFASDRSESRTRLGGGDSNYEMEGFHGLLPSDIELAEFAADVESLLGRGLENECMGMEELGLIDAKYEDEEWECSGKVKEEGGEIHEVVEGDDNTKDMGKESSFELNFDYETCEEVKEKGGLDIEQDENKDCNKGKRKISLQLDYDAVIIAWDGQKCPWTNGDKPNLDIDETLSDFMGICGTEIQYPYGEFGGYGCNQVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFAVPTFPLLK* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5228 443 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Psa6g5228 443 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Psa6g5228 443 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 436 - -
Psa6g5228 443 Pfam CCT motif 389 431 IPR010402 GO:0005515
Psa6g5228 443 ProSiteProfiles CCT domain profile. 389 431 IPR010402 GO:0005515
Psa6g5228 443 CDD Bbox1_BBX-like 19 62 - -
Psa6g5228 443 MobiDBLite consensus disorder prediction 69 90 - -
Psa6g5228 443 MobiDBLite consensus disorder prediction 64 103 - -
Psa6g5228 443 SMART bboxneu5 15 62 IPR000315 GO:0008270
Psa6g5228 443 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5228 Psa-Chr6 459822830 459824927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5228 6 431 C2C2-CO-like Transcription Factor Family AT1G25440 43.764 7.70e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa6g5228 zf-B_box 2.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5228 6 459822830 459824927 Psa6g5228 6 459822830 459824927 ECH