Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5176 ATGAACATGTACCATGTTACACACACTTCTTCAATTTCTTTGATCTTGAACACCACTGGAACATTGGCTATGTCAAAAACTACAAAGAAAGATGAAGAAAATGAGCTGAGAAGAGGACCATGGACACTTGAAGAAGATAGTTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAACATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATTAAAAGAGGGAATCTTACTCCTCAAGAACAGTTGTTGATCCTTGAACTTCATTCCAAGTGGGGTAATAGGTGGTCGAAAATTGCGCAACATCTACCGGGAAGAACCGATAATGAGATAAAGAACTATTGGCGAACAAGGGTCCAAAAACAAGCGCGCCAACTCAACATCGAATCCGGTAGCAAGAGATTCATTGATGCTGTGAAGTGTTTTTGGATGCCAAGATTACTTCAAAAAATGGAACAGAACAACAACTCATCTCCAATCTCTGATCATTCTTCTATCACAAACATGAACAATTTCGGAAACTCTATTGAAGCTTCAACTAGTAACTCAATCTCAACAAGCTTCAATGTTCCTTCACAAAGAGGATTCATAGATGCTTCAAGTGGAAATCATGTGTCAACCAGCTTCAATAATCCTTCTTTGGATTTCCTCCAATTTTCACAGCCACTAGAAACTTCAGAAACCTCAAAAAATGTTGCAAACATGTTTGAGAACAATGTTCACAATTGTCAAATCCAAGACAATTTCTATATTGATGATACAAATTCCTACGGTTTAGAAGGTTTAAGCTTTGATCCATTGTCTTCAATGGAAAATTATGATTTTTCACAGTTTGATTTTCAAACTTCAGGGAATGGATGGATGGTAGACAACATGGCTAATAGTAGTAATTTGTGGAACATGGATGCTATGTGA 966 0.3758 MNMYHVTHTSSISLILNTTGTLAMSKTTKKDEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNNSSPISDHSSITNMNNFGNSIEASTSNSISTSFNVPSQRGFIDASSGNHVSTSFNNPSLDFLQFSQPLETSETSKNVANMFENNVHNCQIQDNFYIDDTNSYGLEGLSFDPLSSMENYDFSQFDFQTSGNGWMVDNMANSSNLWNMDAM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5176 321 CDD SANT 40 85 IPR001005 -
Psa6g5176 321 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Psa6g5176 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Psa6g5176 321 Gene3D - 35 91 - -
Psa6g5176 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Psa6g5176 321 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 28 319 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa6g5176 321 SMART sant 37 87 IPR001005 -
Psa6g5176 321 SMART sant 90 138 IPR001005 -
Psa6g5176 321 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Psa6g5176 321 Gene3D - 94 136 - -
Psa6g5176 321 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 53 62 IPR001345 GO:0003824
Psa6g5176 321 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 28 319 - -
Psa6g5176 321 CDD SANT 95 134 IPR001005 -
Psa6g5176 321 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Psa6g5176 321 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Psa6g5176 321 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5176 Psa-Chr6 445825561 445827389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5176 33 175 MYB Transcription Factor Family AT1G68320 81.818 2.38e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g5176 Myb_DNA-binding 3.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5176 6 445825561 445827389 Psa6g5176 6 445825561 445827389 ECH