Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5175 ATGCCTACGAAGGAAGATAACTCGGAGAAGGAGAAGTCTCTTGATCTCTTTCTAAAGATCGGCTTAGATGAACGCACAGCTCGAAACACCATTGCCAACAACAAAGTCACTACCAATCTCACTGCTGTTATCCACGAGGCTGGTCTTACCGACGGGTGCAGCCGATCGGTTGGAAACCTTATTTATACGGTTGCAACCAAGTATCCTGGGAATGCCTTGCCGCATCGCCCAACGTTGCTGCAATATGTAGTTTCGTCCAAGGTGAAAACAACGGCACAGTTAGATGCGGCACTATCTTTTCTTGCTACAACCGGAAATGAGAACCTTGATTTGAATAAATTTGAAGAAGCATGTGGTGTTGGTGTTGAGGTTTCAACAGAAGATATCAAGCATGCTGTTAATGAAGTTTTTGAGGAGAACAAGGCTTCAATTCTGGAACTACGCTATCGAACAAATGTTGGTGAATTACTTGGGCATGTGCGGAAAAGGCTCCCATGGGCTGATGCAAAAGCTGTGAAGCAACTCGTTGATGCAAAATTATATGAACTACTGGGTGACAAAACAGCAGCTGACAATGAAAAACCTTCTAAAAAGAAGAAGGAGAAACCTGCTAAAGTAGAGGATACGGCAGCACCTGTTGCTACTCCTGAAAAGGCACCTGAAGAAGATCTTAATCCATATTTGATATTCCCTAATCCAGAGGAAAATTTGAAGGTGCATACTGAAGTTCCTTTTAGTGATGGTACTATTCTGAGATGTTGCAATACGAAGGCGCTTCTTGACAAGCACTTGAAAGTAACAGGTGGGAAACTTTTGACCCGATTCCCTCCTGAGCCAAATGGATATTTGCATATTGGTCATGCCAAGGCAATGTTTATTGATTTTGGGCTGGCAAAAGACAGAGATGGAGGTTGCTACCTGAGGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAGTATATTGATCATATCGAAGAAATTGTCCAGTGGATGGGCTGGAAACCATTCAAGATTACTTACACAAGTGATTATTTCCAAGAACTGTATGAATTAGCCGTGGAGCTCATAAGAAAGGGTTGTGCTTATGTTGATCATCAGACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAATTGAACAGTCCCTGGAGAGACAGACCAGTTTCAGAATCGTTGAAACTTTTTGAAGATATGAGAAGTGGTCTTATAGAAGAAGGAAAAGCCACGCTTCGAATGAAGCAAGACATGCAGAGTGATAATTACAATATGTATGACCTTATTGCATACCGAATTAAGTTTACTCCACACCCTCATGCTGGAGACAAATGGTGTATCTACCCAAGTTATGATTATGCTCACTGCATTGTGGATTCACTTGAGAATGTCACACATTCACTGTGTACTCTTGAGTTTGAGACACGCCGTGCTTCATACTATTGGTTGTTACATGCATTAGGTATTTACCAACCTTATGTATGGGAGTATTCAAGGTTAAACATTTCTAACACAGTTATGTCAAAGCGCAAGCTTAATCGTCTGGTTACTGAAAAATGGGTTGATGGGTGGGATGATCCTCGCCTGATGACATTAGCCGGTTTGCGGCGCAGAGGCATGACTTCAACAGCAATCAATTCTTTTGTTCGGGGAATTGGAATCACTAGAAGTGATGGCACTTTGATATCCTTGGGTCGCCTTGAACATCATGTTAGGGAAGAAATGAACAAGACAGCTCCTCGGACAATGGCTGTCCTACATCCACTCAAGGTTGTTATTACTAATCTTGAAGCCAACTCAACAATTGAGGTTGATGGGAAAAAATGGCCTGATGCTCAAGCTGATGATCCATCTGCTTTCTACAAGGTTCCTTTTTCCAATGTTGTATATATTGAACGCACAGATTTCCGTATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGTAAATCTGTGATACTCAGATATGCATTTCCTATAAAATGCACTGAAGTTATTCTAGCTGATGATAATGAGACTATTCTTGAAATTCGGGCAGAGTATGATCCTTCAAAGAAGACAAAGCCTAAGGGTGTTCTCCATTGGGTTGCACAAACTTCTCCTGAAGTTGATCCGTTTAAGATCGAAGTCAGGCTGTTTGATAGGCTGTTCCTATCAGAGAATCCTGCTGAACTTGACAACTGGCTTGGCGATCTTAACCCACATTCCAAAGTGGTAATTCCAAATGCATATGGTTTGTCCTCACTCCGGGATGCAAAAGTTGGGGACAGTTTCCAGTTTGAAAGATTAGGCTATTTTACGGTCGACCAGGATTCTACTCCAGAAAAACTTGTTTTTAATAGAACCGTCACATTAAAGGACAGCTATAGTAAGGGTGGAAAGTAG 2385 0.4164 MPTKEDNSEKEKSLDLFLKIGLDERTARNTIANNKVTTNLTAVIHEAGLTDGCSRSVGNLIYTVATKYPGNALPHRPTLLQYVVSSKVKTTAQLDAALSFLATTGNENLDLNKFEEACGVGVEVSTEDIKHAVNEVFEENKASILELRYRTNVGELLGHVRKRLPWADAKAVKQLVDAKLYELLGDKTAADNEKPSKKKKEKPAKVEDTAAPVATPEKAPEEDLNPYLIFPNPEENLKVHTEVPFSDGTILRCCNTKALLDKHLKVTGGKLLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIRKGCAYVDHQTPDEIKEYREKKLNSPWRDRPVSESLKLFEDMRSGLIEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENVTHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNISNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTSTAINSFVRGIGITRSDGTLISLGRLEHHVREEMNKTAPRTMAVLHPLKVVITNLEANSTIEVDGKKWPDAQADDPSAFYKVPFSNVVYIERTDFRMQDSKDYYGLAPGKSVILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVAQTSPEVDPFKIEVRLFDRLFLSENPAELDNWLGDLNPHSKVVIPNAYGLSSLRDAKVGDSFQFERLGYFTVDQDSTPEKLVFNRTVTLKDSYSKGGK* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5175 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 243 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Psa6g5175 794 PANTHER GLUTAMINE-TRNA LIGASE 12 793 - -
Psa6g5175 794 TIGRFAM glnS: glutamine--tRNA ligase 273 791 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Psa6g5175 794 MobiDBLite consensus disorder prediction 191 218 - -
Psa6g5175 794 Gene3D - 7 122 IPR042558 -
Psa6g5175 794 SUPERFAMILY Nucleotidylyl transferase 271 584 - -
Psa6g5175 794 CDD GlnRS_core 270 580 - -
Psa6g5175 794 Pfam tRNA synthetases class I (E and Q), catalytic domain 271 575 IPR020058 GO:0004812|GO:0005524|GO:0043039
Psa6g5175 794 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 578 769 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Psa6g5175 794 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 277 288 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa6g5175 794 Gene3D Ribosomal Protein L25; Chain P 582 702 IPR020056 -
Psa6g5175 794 PRINTS Glutamyl-tRNA synthetase signature 274 286 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa6g5175 794 PRINTS Glutamyl-tRNA synthetase signature 303 316 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa6g5175 794 PRINTS Glutamyl-tRNA synthetase signature 448 458 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa6g5175 794 MobiDBLite consensus disorder prediction 191 207 - -
Psa6g5175 794 Gene3D - 123 192 IPR042559 -
Psa6g5175 794 PANTHER OS05G0182800 PROTEIN 12 793 - -
Psa6g5175 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Psa6g5175 794 Gene3D HUPs 246 581 IPR014729 -
Psa6g5175 794 Gene3D Ribosomal Protein L25; Chain P 703 787 IPR020056 -
Psa6g5175 794 SUPERFAMILY Ribosomal protein L25-like 578 788 IPR011035 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5175 Psa-Chr6 445354191 445372987 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5175 6 445354191 445372987 Psa6g5175 6 445354191 445372987 ECH