Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5166 ATGGGTTCGAAGATGGAAGGAACTTCTACACCAGCTGTTCGACGGGATCCTTACGAAGTTTTGTCCGTTTCGAGGGATTCAACCGACCAGGAAATTAAAACCGCTTACAGAAAGCTTGCTCTAAAGTATCACCCTGACAAGAATGCCAGCAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCCGACCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCCAATCTTGGGACTGTGAACACGATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCTGCTAATGTGCTTGAAGAGGCTTTGAATGGCACAGTTACTGTCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGCGTGACAATAAGTGAGCAGCAAGCTGAGTCAGGGATTGTAGTTAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGTGGTTATGGTTTGGCATTGCAGGAAGATAGTGAGAAGACTGGGAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCAAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCGGAATTAAAGCCTGGCACACATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAGAATCACTTGAAGATACCACCGAAAAACTTAAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTCGAATCAGAGTATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACGCAAAAGAAAAACAGTCTGTTGATGAGCTTCTGAAACAAAGGGATGGTATCCATTCAACCTTCACCATTGTTAAGCCAACCAATATTAGCGGAAGTGGTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCCGGGGAAGATGGTGGGTCAGATGGCAGGGATAAATCAGGCAAAAAGAAATGGTTCAACCTTAATCTTAAAGGTTCAGGTTCTGATAAGAGGTTGATATGA 1245 0.4169 MGSKMEGTSTPAVRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAESLEDTTEKLKDIEAQILRKRNELRQFESEYRKALARYQEVTDRYAKEKQSVDELLKQRDGIHSTFTIVKPTNISGSGSNLSNGSSSKISGEDSKGESPGEDGGSDGRDKSGKKKWFNLNLKGSGSDKRLI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5166 414 MobiDBLite consensus disorder prediction 1 25 - -
Psa6g5166 414 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 2 408 - -
Psa6g5166 414 PRINTS DnaJ domain signature 18 36 IPR001623 -
Psa6g5166 414 PRINTS DnaJ domain signature 36 51 IPR001623 -
Psa6g5166 414 PRINTS DnaJ domain signature 53 73 IPR001623 -
Psa6g5166 414 PRINTS DnaJ domain signature 73 92 IPR001623 -
Psa6g5166 414 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Psa6g5166 414 SMART dnaj_3 15 73 IPR001623 -
Psa6g5166 414 MobiDBLite consensus disorder prediction 360 414 - -
Psa6g5166 414 SUPERFAMILY Chaperone J-domain 15 86 IPR036869 -
Psa6g5166 414 CDD DnaJ 16 70 IPR001623 -
Psa6g5166 414 Gene3D DnaJ domain 2 98 IPR036869 -
Psa6g5166 414 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 2 408 - -
Psa6g5166 414 Coils Coil 286 341 - -
Psa6g5166 414 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Psa6g5166 414 MobiDBLite consensus disorder prediction 360 376 - -
Psa6g5166 414 MobiDBLite consensus disorder prediction 377 399 - -
Psa6g5166 414 Pfam DnaJ domain 16 78 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5166 Psa-Chr6 444711618 444718917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5166 7 88 C2H2 Transcription Factor Family AT1G74250 41.379 3.01e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5166 6 444711618 444718917 Psa6g5166 6 444711618 444718917 ECH