Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5153 ATGGTTCCAAAGCGAAAAGGGCTGACGCGGAATGTTAAACTGGGTATAGGTTTGGGTATTGGAATCCTGGGCATCTTGTTCATCGGGTTGCTGTTTCTCCAACTCTACAAACGAAAACATACTATCTCGGTTGGACACTTCCAATCTAGTAACTCTTATTCTGATTCGTCCATAAATCCACGCAGAGAAATTGGTAGTAAACACTTCGGAGTTCCATTGTTCTCCTACGACGAGCTTAGAAAAGCAACAAACAATTTCGACCATACTAAAGAACTTGGAGATGGAGGCTTTGGTACAGTCTACTTTGGGAAACTTCCCGATGGACGTGAAGTTGCCGTCAAACGTTTATACGAACACAACTATAGAAGAGTAGAACAGTTTATGAACGAAGTTAATATCCTGACAACTTTGCGCCATAAAAATCTCGTGTCTCTTTATGGCTGCACATCACAGCACAGCCGTGAACTACTGCTTGTGTATGAATATATCTCAAATGGCACCATCGCAAGTCATCTCCATGGTGATCTAGCAAGAATAGACACACTGCCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCGAGTGCATTGGCTTATCTGCATGCTTCTGGCATCATTCACCGTGATGTGAAAACCAAAAACATTCTCCTTACAAACAGCTTCAGTGTCAAAGTTGCAGATTTTGGTCTTTCAAGACTATTCCCCCACGATATCACCCATGCGTCCACAGCACCACAAGGGACACCAGGTTACGTTGACCCGGACTATCATCAATGCTACCAGCTTACTAACAAGAGTGATGTATACAGTTTTGGCCATAAGGATGAGATTAACTTGTCAAACCTGGCCTTAAAGAAGATCCAGAAGGGTGAATTTACTGAGCTGGTGGATCCAAATCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATAGTTTCGGTGGCAGAGTTGGCTTTTCAATGTTTGCAAAGGGAAAAGGAATTGAGACCTTCCATGGATGAGGTTTTGAATGTGCTGATGAGAATTGAAAGTGGGAAGGATGAGCCTGAGCATATAGTTGAAGAAGATGTGCATCCACCTTCACCAGATGGAAATGAGGATGAGATTGGATTATTCCAAAAAACAATACGACATCCTTCACCTAAAGCTGTGGTTGATGAATGGGATAGTCGACCTACTACGTCCAATACCATCAGTGCTCAAGATCATGAAAGATGTCCAACTTCTTTTAGTTGTGGATATCTTGGCCAGATTACATTCCCTTTCACAGTTCCACAACACCCTCAATGCGGCGCTTTGGCTATACTAGGCTGTGACAATAAGAATACAAATGCTCCCAAAACCATCCAACTAGGCAGCCCACCATCAAAACAGTTTTTCACTGTTACATACGTGGAACCTGATGCCATCACGGTCGAAGAAAATGAAGCTCAACGGAAGAAATTGCAATCCAAAAATTGTCAAGCCTTTCACAATTTTACTGTTCCTCCCACTTCTCCTTTAGCTTCTTTCTACAACAAATATAATATAACTATGTTCAAATGCAATCACTCCCTTAGTGTCATCCCTCCCAAACCATTTTATAACTACACAAATTGTCCCGGCTATAGTATCTACTATGGCCTTCAAAACTCTGCTGGTAATTTCAAAGTGCCAAGTTCTTTGGCACAGTGTACAGTGTATCAGGTTGCAATAAGAGACAGCCCTACTGATGACCCCTTTGATTTTCTATCTCCTGAATTCCAAATTCAAGTACAATTATCTGATGATTGCAACAAGTGTCTTCGCCACCGAGGGGGCCAATGTCAACTTGATATTCACAAAAATTTCTTTTGTGCCAAAGAGGATAAAACATTGGCTTGGAAGTTAGGAATCGGCATTGGACTCCTTGTCATTATTATAATTGGATTGCTGATTATGTGGCGCTGCAAACGACGTGTTCCTACTTTCTACCACAAATACACAGAGAGTGACAGTGTCTACCATGGGGTGCCAGTATTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAACTCGGAGAAGGAGGATTTGGGACTGTTTACTATGGAAAACTAAAAGATGGCCGTGAAGTTGCTGTGAAGCGCCTATATCAGCACAATTTTAAACGAGTTGAACAATTTATGAATGAAATCAAAATCCTTACTCGCTTGCGCCACAGAAATCTAGTCACTCTTTATGGCTGCACTTCACAACATAGTCATGAACTACTGCTTGTATACGAATACATTTCAAATGGAACTGTCACCAGTCATCTGCGTGGTGAATCTGGCATTTTGCCTTGGCATATCCGAATGAAAGTTGCCTTAGAGACTGCTACTGCTTTGGCTTATCTCCATGCTTCTGAAATCATTCACCGAGATGTGAAAACAAACAATATTCTCCTTGACGACACCTTTTGGATTAAAGTTGCAGATTTTGGACTGTCAAAACTGTTCCCAAACGATGTCACACATGTCTCCACAGCTCCACAAGGATCACCGGGCTATGTGGATCCGGAATATCATCAATGCTACAGGCTTACAAGCAAGAGTGATGTTTACAGTTTTGGGGTTGTGCTTGTTGAGCTGATATCATCTATGCCGGCAGTTGATATGA 2641 0.4173 MVPKRKGLTRNVKLGIGLGIGILGILFIGLLFLQLYKRKHTISVGHFQSSNSYSDSSINPRREIGSKHFGVPLFSYDELRKATNNFDHTKELGDGGFGTVYFGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSQHSRELLLVYEYISNGTIASHLHGDLARIDTLPWHIRMKIAIETASALAYLHASGIIHRDVKTKNILLTNSFSVKVADFGLSRLFPHDITHASTAPQGTPGYVDPDYHQCYQLTNKSDVYSFGHKDEINLSNLALKKIQKGEFTELVDPNLGFDSDNEVKRMIVSVAELAFQCLQREKELRPSMDEVLNVLMRIESGKDEPEHIVEEDVHPPSPDGNEDEIGLFQKTIRHPSPKAVVDEWDSRPTTSNTISAQDHERCPTSFSCGYLGQITFPFTVPQHPQCGALAILGCDNKNTNAPKTIQLGSPPSKQFFTVTYVEPDAITVEENEAQRKKLQSKNCQAFHNFTVPPTSPLASFYNKYNITMFKCNHSLSVIPPKPFYNYTNCPGYSIYYGLQNSAGNFKVPSSLAQCTVYQVAIRDSPTDDPFDFLSPEFQIQVQLSDDCNKCLRHRGGQCQLDIHKNFFCAKEDKTLAWKLGIGIGLLVIIIIGLLIMWRCKRRVPTFYHKYTESDSVYHGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNFKRVEQFMNEIKILTRLRHRNLVTLYGCTSQHSHELLLVYEYISNGTVTSHLRGESGILPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDDTFWIKVADFGLSKLFPNDVTHVSTAPQGSPGYVDPEYHQCYRLTSKSDVYSFGVVLVELISSMPAVDM 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5153 880 Pfam Protein tyrosine and serine/threonine kinase 89 340 IPR001245 GO:0004672|GO:0006468
Psa6g5153 880 Pfam Protein tyrosine and serine/threonine kinase 684 873 IPR001245 GO:0004672|GO:0006468
Psa6g5153 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Psa6g5153 880 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 400 880 IPR044652 -
Psa6g5153 880 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 398 IPR044652 -
Psa6g5153 880 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5153 880 Gene3D Transferase(Phosphotransferase) domain 1 163 355 - -
Psa6g5153 880 Gene3D Transferase(Phosphotransferase) domain 1 758 880 - -
Psa6g5153 880 Gene3D Phosphorylase Kinase; domain 1 58 162 - -
Psa6g5153 880 Gene3D Phosphorylase Kinase; domain 1 653 757 - -
Psa6g5153 880 SUPERFAMILY Protein kinase-like (PK-like) 659 875 IPR011009 -
Psa6g5153 880 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524
Psa6g5153 880 SMART serkin_6 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5153 880 SMART serkin_6 681 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5153 880 ProSiteProfiles Protein kinase domain profile. 681 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5153 880 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
Psa6g5153 880 SUPERFAMILY Protein kinase-like (PK-like) 64 342 IPR011009 -
Psa6g5153 880 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 10 398 - -
Psa6g5153 880 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 400 880 - -
Psa6g5153 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5153 Psa-Chr6 444215969 444259053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5153 412 880 Receptor kinase-like Gene Family AT1G25390 45.968 3.01e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa6g5153 PK_Tyr_Ser-Thr 2e-42 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5153 6 444215969 444259053 Psa6g5153 6 444215969 444259053 ECH