Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5130 ATGTATTGCTATAAGGTTTTTTATCAAGATAAACGCGATGATGGCATAATTGATCTTGGTCTTAGTCTCGGAACGGTTCATCATGATGCTTATCATTCTTCAACCAACTTGTATGATGATGACCTTATGGAATGGCCTAATGTGAAGAATTCAAGCACGGAGCATTCGAGATCTGTTCATGAAAACTTTGATGAAGAGATAGAGGGGGTTCAGAGTAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGTGTCTCCATAGGTAGGAAAATTTGTGTTCTTGATCATGGAGGATATTCAAGTCTAGCAATTCAACTAGAAGACATGTTTGGTAGCCACTCAGTTTCTGGTATAAGGTTGTTTCAATCTGGATCAGAGTATTCATTATTCTATAAAGATAGAGAAGATAATTGGAGGGCTGTTGGTGATGTTCCTTGGAAGGAGTTTGTGGAATGTGTGAAAAGGCTGAGGATTGCAAGAAAGAATGAAGCCTATGTTAATTAA 507 0.3807 MYCYKVFYQDKRDDGIIDLGLSLGTVHHDAYHSSTNLYDDDLMEWPNVKNSSTEHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICVLDHGGYSSLAIQLEDMFGSHSVSGIRLFQSGSEYSLFYKDREDNWRAVGDVPWKEFVECVKRLRIARKNEAYVN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5130 168 SUPERFAMILY CAD & PB1 domains 76 159 - -
Psa6g5130 168 ProSiteProfiles PB1 domain profile. 76 164 IPR000270 GO:0005515
Psa6g5130 168 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 166 IPR003311 GO:0005634|GO:0006355
Psa6g5130 168 Pfam AUX/IAA family 45 165 IPR033389 -
Psa6g5130 168 Gene3D - 70 168 - -
Psa6g5130 168 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 5 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5130 Psa-Chr6 442089045 442090907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5130 71 159 B3 DNA Binding Superfamily AT1G19220 38.202 1.17e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Psa6g5130 AUX_IAA 1.8e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5130 6 442089045 442090907 Psa6g5130 6 442089045 442090907 ECH