Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5106 ATGAAATATCAGTTTTGGCTAGTAGAATGGGCTTGTATAGCCATATGTATTCAAAGGTTGCTGTCTTCAGTAAGGTGCCACTTCCTAACTATAGATATGATTTGGACGAAAGGAAGCCTCAGAGGGAGGCGGGTTGGTGCACATTTTGAGGAATACCTTAGTCAAAAGCCCAGGATAAACAAAAGCTTTTCAGATTTGTCAAGCAGTGATGGCAGTCTTGGTACAGATGAAGGGCTTTTTGAACAGCCTGAGCCGCCATCATCCAGTAAGGCTGTTGTGGAGAAAATTCTCTGGCAGAGAAGCTTACAAATGCGAGATGTGCAACAAGCTTGGCAGGAGTCATCTGAAGGAAAAAGAATGCTAGAATTTCGAAGCAATCTCCCCGCTTATAATGAGAAAGAAGCAATATTATCGGTCATATCAAAGAATCAGGTAGTCATCATTTCAGGCGAAACAGGTTGTGGCAAGACAACACAAATTCCTCAATTTATTTTAGAGTCTGAGATAGAATCAATTCATGGAGCTGCTTGTAATATTATATGCACACAGCCAAGACGCATTTCAGCCATGTCTGTTTCAGAAAGGGTTGCTTTTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGACTGGAGGGAATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATCTTATTAAGAAGATTACTGGCTGATAGAAACCTTAAAGGTGTAACTCATGTTATTGTCGATGAAATTCATGAACGTGGGATGAATGAAGATTTTTTGCTTATTGTCCTTAAAGAACTCCTTCCCCGTCGGCCCGAACTCAAACTGATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTCTCTTCATATTTTAATGGGGCTCCAGTAGTGAATATATCGGGCTTTACACACCCTGTTAGAACTCTCTTTTTGGAGAGCATTCTTGAAACGACGGGCTATCGATTGACTCCTTCTAATCAAATTGATGATTATGGCCAAGAGAGGTTGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGTCAAATTGCTTCTGCCGTGGAGGATGCAATTAGATCTGCTGATTTCAAAGATTACAGCCTTCAGACACAGGAGTCTTTGTCATGTTGGAATCCAGACTGTATTGGTTTTAGTCTCATAGAATATATCCTGTGCAATATTTGTGAGGATGAAAGGCCTGGCGCTGTTTTGGTTTTCATGACTGGGTGGGATGATATCAGCTCTCTGAAAGAGAAGCTCCAAGCACATACTGTCTTGGGAGATCCAAACCGTGTTTTGTTGCTTACGTGTCATGGCTCAATGGCTAGTTCAGAGCAAAAAGAAATATTTGAAGAGCCTGAAGATGGAGTGAGAAAAATAGTGCTAGCAACAAATATTGCTGAAACGAGTATCACAATAGATGATGTTGTTTTTGTTCTGGACTGTGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAATGCGCCTTGTTTGCATCCTACATGGATCTCTAAGGCTTCTGCTCATCAAAGAAGAGGAAGAGCTGGCCGTGTTCAACCTGGAGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGGTTTTGCAGAGTATCAATTGCCAGAAATTTTGAGAACACCTTTGCAGTCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCTGACTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATACTCGCGGTACAAAATGCAGTTGAATATCTAAAAATAATTGGGGCTTTGGACGTGAATGAGAATCTGACAATTCTAGGACACTATTTGACAAAGCTTCCTATGGAACCCAAACTTGGCAAGATGCTTCTATTAGGTGCTATCCTCAATTGCCTGGATCCCATATTAACTGTTGTTGCTGGTCTTAGTGTGAGAGATCCTTTTCTAACACCACTGGATAAAAAAGATCTTGCCGAGGCGGCAAAATCTCAATTCTCTGGTGCATACAGTGACCACCTAGCACTTGTGCGCGCTTATGAGGGTTGGAAAGTTGCTGAGATAGACCTGGGTGGATATGAATATTGTTGGAAAAACTTTCTTTCATTCCAATCCATGAAATCTATTGATGCTCTTCGGAGGGAGTTCAAAGGCATGCTTACAGATATTGGATTAGTTGATAGCAACACAACAAGCTGTAACACATGGAGCTATGATGTGAATCTTATCCGGGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGTTCTGTGCTGCATAATGAGAAGTCATTCACTTTGAAAACAATGGAGGATGGTCAAGTGCTCTTATATTCGAACTCGGTTAATGCCCGGGAAACTAAAATTCCATATCCGTGGTTAGTTTTTAATGAGAAGATAAAAGTGAACTCAGTTTTTCTCCGTGACTCAACAGCCGTGTCTGATTCAGTAGTGCTTTTGTTTGGTGGAAGCTTATCAAAAGGAGATGCTGATAATCACATAAAAATGTTAGGAGGATATCTGGAGTTTTTCATGGAACCTACTGTTGCTGATATGCATCAGAGTATAAGGAGAGAACTTGATGACTTCATTCAAAGCAAACTACTTTCTCCAACAATGAGCATACACTCGCATCATAACCTCCTATCCGCGGTACGGTGTCTGATTTCCAACGACTCATGTGAAGGCAGATTTGTATTTGGTCGCCAGGTCCTTAAACCATCAATGAAATCCGTGATCCCCTCACAGCCAGCATCATTGGTTTCAAGGACAGAGAGTGGACCTGGGGGTGATAATTCTAAGAGTCAGCTCCAAACTTTGCTTACAAGAGCAGGATATGCTGCACCTGTCTACAAGACTAAACAGTTGAAGAACAACCAGTTTCGATCTTCAGTTGACTTAAATGGAGTGGAGATAATGGGTCAACCTTGTAGCAATAAAAAGAGTGCAGAAAAAGATGCTGCAGCTGAAGCACTGCAATGGTTAATGGGCAAGCAAGCTGGCTGTGAATATATCGATCACATGTCGATGTTGCTGAAAAAAAGTAAGAAGGATCACAATTAA 3063 0.4123 MKYQFWLVEWACIAICIQRLLSSVRCHFLTIDMIWTKGSLRGRRVGAHFEEYLSQKPRINKSFSDLSSSDGSLGTDEGLFEQPEPPSSSKAVVEKILWQRSLQMRDVQQAWQESSEGKRMLEFRSNLPAYNEKEAILSVISKNQVVIISGETGCGKTTQIPQFILESEIESIHGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELKLILMSATLDAELFSSYFNGAPVVNISGFTHPVRTLFLESILETTGYRLTPSNQIDDYGQERLWKMNKQAPRKRKSQIASAVEDAIRSADFKDYSLQTQESLSCWNPDCIGFSLIEYILCNICEDERPGAVLVFMTGWDDISSLKEKLQAHTVLGDPNRVLLLTCHGSMASSEQKEIFEEPEDGVRKIVLATNIAETSITIDDVVFVLDCGKAKETSYDALNNAPCLHPTWISKASAHQRRGRAGRVQPGECYHLYPRCVYDGFAEYQLPEILRTPLQSLCLQIKSLRLGSISDFLSRALQSPEILAVQNAVEYLKIIGALDVNENLTILGHYLTKLPMEPKLGKMLLLGAILNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFSGAYSDHLALVRAYEGWKVAEIDLGGYEYCWKNFLSFQSMKSIDALRREFKGMLTDIGLVDSNTTSCNTWSYDVNLIRAVICYGLYPGICSVLHNEKSFTLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLSKGDADNHIKMLGGYLEFFMEPTVADMHQSIRRELDDFIQSKLLSPTMSIHSHHNLLSAVRCLISNDSCEGRFVFGRQVLKPSMKSVIPSQPASLVSRTESGPGGDNSKSQLQTLLTRAGYAAPVYKTKQLKNNQFRSSVDLNGVEIMGQPCSNKKSAEKDAAAEALQWLMGKQAGCEYIDHMSMLLKKSKKDHN* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5106 1020 Gene3D - 87 305 IPR027417 -
Psa6g5106 1020 Pfam Helicase associated domain (HA2) 588 661 IPR007502 GO:0004386
Psa6g5106 1020 SMART ultradead3 125 318 IPR014001 -
Psa6g5106 1020 Gene3D - 567 671 - -
Psa6g5106 1020 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 304 IPR014001 -
Psa6g5106 1020 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 43 946 - -
Psa6g5106 1020 SMART DRBM_3 933 996 IPR014720 -
Psa6g5106 1020 PANTHER ATP-DEPENDENT RNA HELICASE 43 946 - -
Psa6g5106 1020 SMART ha2_5 587 677 IPR007502 GO:0004386
Psa6g5106 1020 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 743 824 IPR011709 -
Psa6g5106 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 685 IPR027417 -
Psa6g5106 1020 Gene3D - 917 1000 - -
Psa6g5106 1020 Pfam Double-stranded RNA binding motif 933 995 IPR014720 -
Psa6g5106 1020 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 932 997 IPR014720 -
Psa6g5106 1020 Gene3D - 390 543 IPR027417 -
Psa6g5106 1020 SUPERFAMILY dsRNA-binding domain-like 927 995 - -
Psa6g5106 1020 CDD DEXHc_RHA-like 143 303 - -
Psa6g5106 1020 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 565 IPR001650 -
Psa6g5106 1020 CDD SF2_C_RHA 374 533 - -
Psa6g5106 1020 Pfam DEAD/DEAH box helicase 136 287 IPR011545 GO:0003676|GO:0005524
Psa6g5106 1020 Pfam Helicase conserved C-terminal domain 393 524 IPR001650 -
Psa6g5106 1020 SMART helicmild6 419 525 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5106 Psa-Chr6 440445045 440456608 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5106 6 440445045 440456608 Psa6g5106 6 440445045 440456608 ECH