Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5081 ATGGGGGATCACTTTGATTTACTGGTGGATCGATTGCTTACGGAATCGACGTTAGAGGCTGCGCTTGAAAGCAGAAAGCGGGCTATGCAGGCTGCGTCCTCCGCAGTGAATGACGCGGAAATTGATCTGTCTTTGTTGAAGATGGGTCTGGATAATGTTAAATGTTCAGGGAAGATGGTGGAATGTAGGATATGTCATGATGATGATGATGATTCGAATATGGAGACACCTTGCTCCTGTTGTGGTAGTTTGAAGTATGCACACAGAAGATGTATACAACGGTGGTGCAATGAGAAGGGCAACACCACCTGTGAAATATGCCACCAGCCATTCAAACCTGATTATACAGCTCCTCCTCCATTGTTTCAATTTGGACGTATTCCAATGAGTTTCAGAGGAAATTGGGAAATTTCGCGAAGAGACTTAAATAGTACTCATTTAGTTAGCATGGTTCCCTCTGATCAAAGCCTTAACAATTCTAACTATGATCCATATTCAGCCTCTTCTTCAGGAAGTTTGATATGCTGTCGTTCGGTTGCTATCATTTTCATGGTTCTGCTGATTTTAAGACATACACTTCCCCTCCTAATTAGTGGAAGTAAAGACTTCTATTTCCCGCTTTTCATGGTGTTATTATTTCGGAGTGCTGGAATTGTCGTACCTATATACTTCATGGTTAGAGCAGTGGCACTAATCCAGCGACATCGGAGACAACATCGAGAGCATCCTAGGGACTTGGTAAGTTCATCGGATGATGAAATCGAGCAAGCAGGTTTGCAGCCTCAACCTCATATCATACATTTAGTGTAG 810 0.4284 MGDHFDLLVDRLLTESTLEAALESRKRAMQAASSAVNDAEIDLSLLKMGLDNVKCSGKMVECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGNTTCEICHQPFKPDYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPSDQSLNNSNYDPYSASSSGSLICCRSVAIIFMVLLILRHTLPLLISGSKDFYFPLFMVLLFRSAGIVVPIYFMVRAVALIQRHRRQHREHPRDLVSSSDDEIEQAGLQPQPHIIHLV* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5081 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Psa6g5081 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Psa6g5081 269 PANTHER OS01G0121200 PROTEIN 1 266 - -
Psa6g5081 269 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Psa6g5081 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 118 IPR013083 -
Psa6g5081 269 SUPERFAMILY RING/U-box 60 112 - -
Psa6g5081 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Psa6g5081 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Psa6g5081 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Psa6g5081 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5081 Psa-Chr6 439686322 439690750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5081 14 107 C3H Transcription Factor Family AT5G05830 34.314 4.83e-08 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5081 6 439686322 439690750 Psa6g5081 6 439686322 439690750 ECH