Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5060 ATGGTGGTTTTTGGCGGGAAAAAGGTTCACCAAATTGTCACCGGATTCGGCGGCAGCGGCCTTGGCCAGATAGTCGCCGCCGTCGCTGTATCCTTCCTTGTTCGAATCTTCTCCGCTCCCGGTCCCGCTCTCTTGCCGGAGAACGACGATGACGACGATGTTCCGAGTAACGATTCCCCCGACGGTGAACCTCCAACTCCCTCCGGAAAGGTTACGCCGGTTACAATTCGCTGGAACAGTATTAATTGTTCGCTATCCGATAAATCCTCCAAGTCCGTGAGGTTTCTGCTTAAAAATGTGAGTGGAGAAGCAAAACCAGGAAAATTATTAGCCATAATGGGGCCTTCAGGTTCAGGGAAGACAACATTGCTCAATGTTCTTGCCGGTCAGTTGGCAGCGTCGCCTCGGCTTCATCTGAGTGGCCTTTTGGAGTTCAATGGAAAACCTAGTTCTAGGAATAGTTACAAGTTTGCATACGTGAGACAGGAGGATCTATTCTTTTCACAGCTTACTGTGAGGGAAACATTGTCTCTTGCTATTGAGCTACAGCTTCCCAATATATCTTCTGTTGAAGAGAGGGATGAATATGTCAACAATCTCCTATTCAAGCTAGGCTTGGTCAGTTGTGCTGATACCAATGTTGGTGATGCCAAAGTTCGTGGAATAAGTGGTGGTGAAAAGAAACGTTTATCCTTGGCATGTGAACTGCTTGCAAGCCCATCTGTTATTTTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTTATGGAAACTCTCCGACAACTTGCACTCGATGGTCATACTGTAATATGCTCTATACATCAGCCAAGAGGTTCCGTGTATAGCAAATTCGATGACATTGTTTTGCTAACTGAGGGTTCACTTGTTTATGCCGGTCCTGCTCGCGATGAACCGTTGGCGTACTTCTCAAAATTTGGGTACCACTGCCCGGATCATGTAAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGACAGTGTCCATTCTTCTAAAAAAAGGATCAATGGGCTTGTTGAGTCTCTCTCACAAAAACTACCCACAATAATATATGCAACTCCAATTACTTTAGACGACCTCTCAAAAAGTAGAAAAAGAATTAGCAAGAGGACTATAGCAAAAAGGAAAGGGGGGTGGTGGAAGCAATTCTGGTTGCTTCTTAGACGGGCATGGATGCAGGCTTCCCGCGATGCACCTACCAACAAAGTTCGGGCGAGGATGTCAATTGCATCAGCAGTTATCTTTGGTTCAGTTTTTTGGCGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAACACCGCTATGGCTGCTCTCACAAAGACTGGAGGTGTGTTTCCAAAGGAACGGGCAATTGTTGATAGAGAACGTGCTAAAGGCTCCTATTCCTTAGGCCCCTATCTGTTTTCGAAACTCTTGGCTGAGATTCCAATTGGAGCAGCATTTCCATTAATGTTCGGTGCTGTTTTGTACCCAATGGCACGTCTCCATCCTACTTTGATGAGATTTGGGAAATTCTGTGGAATCGTTACTGCGGAGTCTTTTGCTGCATCTGCGATGGGTCTTACTGTTGGTGCTATGGTTCCAACTACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATAGTATTTGGTGGCTACTATGTTAACCCGGAAAATACCCCGATTATCTTCCGCTGGATTCCTAGTGTTTCTCTGATAAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTTCGTGGTCTTCAATTTGATCACCAGCATTCATTTGATATTCAAACTGGAGAACAGGCACTGGAGCGTCTTTCATTTGGAAAAACTACAATTAGGGATACGCTGGCAGCACAAAATAGAATATTGTTATTTTGGTATTGCACCACCTACCTTCTCCTTGAGAAAAACAAGCCCAAATACCAGCAACTTGAAACAGCCCCTTCTGACCATGACAAGCCGCATTTAAAACTCGAGGAGTTCAATTCTGAACAGTCTGATCTGACATATGAAGCACCAGACGTCAGCCAAGTTGGTTCCGACGAGCCCCTCGAGTCACCTGAAGTAGACCCTGTTGGCTCTTTTATCTTAGAAGGTGCTCAGTAG 2187 0.4522 MVVFGGKKVHQIVTGFGGSGLGQIVAAVAVSFLVRIFSAPGPALLPENDDDDDVPSNDSPDGEPPTPSGKVTPVTIRWNSINCSLSDKSSKSVRFLLKNVSGEAKPGKLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGLLEFNGKPSSRNSYKFAYVRQEDLFFSQLTVRETLSLAIELQLPNISSVEERDEYVNNLLFKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYSKFDDIVLLTEGSLVYAGPARDEPLAYFSKFGYHCPDHVNPAEFLADLISIDYSSSDSVHSSKKRINGLVESLSQKLPTIIYATPITLDDLSKSRKRISKRTIAKRKGGWWKQFWLLLRRAWMQASRDAPTNKVRARMSIASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTGGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGAVLYPMARLHPTLMRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSVSLIRWAFQGLCINEFRGLQFDHQHSFDIQTGEQALERLSFGKTTIRDTLAAQNRILLFWYCTTYLLLEKNKPKYQQLETAPSDHDKPHLKLEEFNSEQSDLTYEAPDVSQVGSDEPLESPEVDPVGSFILEGAQ* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5060 728 Pfam ABC-2 type transporter 279 345 IPR043926 GO:0140359
Psa6g5060 728 MobiDBLite consensus disorder prediction 44 72 - -
Psa6g5060 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 308 IPR027417 -
Psa6g5060 728 SMART AAA_5 106 299 IPR003593 -
Psa6g5060 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 322 IPR003439 GO:0005524
Psa6g5060 728 Pfam ABC transporter 97 249 IPR003439 GO:0005524
Psa6g5060 728 Gene3D - 72 311 IPR027417 -
Psa6g5060 728 MobiDBLite consensus disorder prediction 691 728 - -
Psa6g5060 728 Pfam ABC-2 type transporter 399 609 IPR013525 GO:0016020|GO:0140359
Psa6g5060 728 ProSitePatterns ABC transporters family signature. 222 236 IPR017871 GO:0005524
Psa6g5060 728 CDD ABCG_EPDR 73 304 - -
Psa6g5060 728 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 677 - -
Psa6g5060 728 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5060 Psa-Chr6 438081220 438088689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5060 96 304 Calmodulin-binding Proteins AT2G36910 28.571 2.04e-11 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5060 6 438081220 438088689 Psa6g5060 6 438081220 438088689 ECH