Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5039 ATGACACTCTCACAATTATTCAGAAAATTCCCCAATTTTGTTCATCTCTCAAAATCTTGTTACCCAATTTCTCTAACACCATCACCAAGTTCAGATTTTGATCACCATTCCTCAAAACCCACCAATCAATTCAGCCAAAACCCGTCTGGGTCTCTCAAATTCAACATTTTTTCATTTCACACTTCACGTGTTAATGTTAATAAACCCAACCCAACCAACCCAGATGTAGAAACAATCTGCAAAATCTTATCCACCGCACCAGATTCTCCCGTCGATGTCTCCCTCCGCAACTTCCCGGCGGAGGTGTCGCCGGAGCTCGTTGTTGATGTCTTGAACAAGCTCAGCAATGCTGGGATTCTCGCACTCTCGTTCTTCCGTTGGGCGGAGAAACAGAAAGGGTTCAAGCACAGTACAGAGAGTTTCCATGCTTTGATTGAAGCATTGGGTAAGATCAAACAGTTTAAGATGATTTGGAATTTGGTTGATGAAATGAAACAACAAAAGTTGATAAATGGTGACACTTTTGCTCTCATTGCTCGGAGATACGTCAGAGCTAGAATCGTTATCGAGGCATTGAAGACGTTTGAGAGAATGGAAAGATACGGATTGAAGCCTCAGATATCGGATTTCAACAAGTTAATTGATGTATTGTGTAAGTCGAAGTTTCATGTTGAGAAAGCACAGGAACTGTTTGATAAAATGAGGCAATGGGATTTGGAGCCTATTTTGAAGTCTTATACTATTCTGTTAGAAGGTTGGAGTCAGCAACAGAATTTGTTGAAGGTTAATGAGGTTTGTAGAGAGATGAAGGATGAGGGTTTTGAGCCTGATGTTGTTACCTATGGTATAATCATTAATGCTTATTGTAAGGCTAAAAAGTATGATGAGGCTATTGGTTTTTATCATGAGATGCAATTGAAGAATGTGAGTCCTAGTCCTCATATATATTGTACTTTGATTATTGGTCTTGGTAATGGTAATAGATTAGATGAAGCTCTTGAGTTCTTTGAAAAATCTAAGGCTAGTGGATTTCCACCGGAGGTACCAACTTATAATGCTGTTGTTGGGGCTTACTGCTGGGCAATGCAGATCGATGATGCATACAGGACTGTTGGTGAGATGAAAGAGCTTGGGATCGGTCCGAATTCTCGAACATATGATATAATACTTGTTCATTTGATTAAGGGTGGAAGAACAAAAGAAGCTTACTCGGTTTTCAAGAGAATGAGTAGCGAGATGGGGTGTGAGCCGAGTGCAAACACGTACGCGATTGTGGTGAGGATGTTTTGTAATGAAAACCAATTGGATATGGCAATGGTAGTTTGGGATGAGATGAAAGACAAGGGAATTCTTCCTGGAATTCACATGTTCTCGACGTTGATCATTTCCTTGTGTCGGGAAAATAAGTTGGATGAAGCATGTAAGTACTTTCAACAAATGTTGGATGTTGGGATTCGGCCTACTGCGAATATGTTCAGTGCCTTCAAGAGTGCTCTAATGGACGCGGGAATGGAGAATACTGTGAAACATTTTGCTCTGAAAGTTGATAAACTGAGGAATACTCCATTGATTGCTTAA 1578 0.4037 MTLSQLFRKFPNFVHLSKSCYPISLTPSPSSDFDHHSSKPTNQFSQNPSGSLKFNIFSFHTSRVNVNKPNPTNPDVETICKILSTAPDSPVDVSLRNFPAEVSPELVVDVLNKLSNAGILALSFFRWAEKQKGFKHSTESFHALIEALGKIKQFKMIWNLVDEMKQQKLINGDTFALIARRYVRARIVIEALKTFERMERYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWDLEPILKSYTILLEGWSQQQNLLKVNEVCREMKDEGFEPDVVTYGIIINAYCKAKKYDEAIGFYHEMQLKNVSPSPHIYCTLIIGLGNGNRLDEALEFFEKSKASGFPPEVPTYNAVVGAYCWAMQIDDAYRTVGEMKELGIGPNSRTYDIILVHLIKGGRTKEAYSVFKRMSSEMGCEPSANTYAIVVRMFCNENQLDMAMVVWDEMKDKGILPGIHMFSTLIISLCRENKLDEACKYFQQMLDVGIRPTANMFSAFKSALMDAGMENTVKHFALKVDKLRNTPLIA* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5039 525 Pfam Pentacotripeptide-repeat region of PRORP 399 511 IPR033443 -
Psa6g5039 525 Gene3D Tetratricopeptide repeat domain 222 390 IPR011990 GO:0005515
Psa6g5039 525 PANTHER OS01G0505500 PROTEIN 74 522 - -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 417 IPR002885 -
Psa6g5039 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 74 522 - -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 421 453 IPR002885 -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 350 382 IPR002885 -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 456 488 IPR002885 -
Psa6g5039 525 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 241 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Psa6g5039 525 SUPERFAMILY TPR-like 277 482 IPR011990 GO:0005515
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Psa6g5039 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Psa6g5039 525 Gene3D Tetratricopeptide repeat domain 87 221 IPR011990 GO:0005515
Psa6g5039 525 Gene3D Tetratricopeptide repeat domain 391 515 IPR011990 GO:0005515
Psa6g5039 525 Pfam PPR repeat 181 203 IPR002885 -
Psa6g5039 525 Pfam PPR repeat 140 167 IPR002885 -
Psa6g5039 525 Pfam PPR repeat family 276 323 IPR002885 -
Psa6g5039 525 Pfam PPR repeat family 210 252 IPR002885 -
Psa6g5039 525 Pfam PPR repeat family 346 390 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5039 Psa-Chr6 435967674 435969251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5039 76 509 Glycosyltransferase AT1G05670 24.070 6.63e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5039 6 435967674 435969251 Psa6g5039 6 435967674 435969251 ECH