Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4674 ATGAAGGTAGCATCTGATTTCAACTTTAACCAAGAGGATGGAACTTTGCATAATTATCTCACTTGTCTGCCTCCATTAGAGACCAACGAGAATGCTGAAGCTACTTTGAATTCACTTACCTTTGATTTTTCTCCTACTACATCATATGATAACGTCTTATTTAATACCTTATATGATGAATCCATCGTTCCCATAAGAAATAACCCCTTGGATACATCAATGTCCGAACTTTTTTCTGCGGATACAAATAAAATACATCCACATGAAGAAGCTGATAATGTAATTCCTACCGAAGATTACTCACCTGACTTATCTTTAATCTCAAGTGATGGTTCTATGAAAGATTCAGTTGAGGGTGGAAATTATATTCAAGAAGTAGGTCAGGTTGAGGCAAACATTGAAGTTCCTGATAGGGAAATGCAATCTTTAGCTTTAATGAATAGAAATCAAATTCAGAGATGGAATGATGAGGTTTTTCGTACACAAGAGCTCATTTTAGATAGGCTTGAGAATAGGATGACCATTACCGTAGCAAAATCTGATGAAGAGAATGCTAGTAATCAAATCAGTCGGAGTAGTCTCATAATGCCATTTCAGGACCTAACAAATAAACAGTTGAATCCTCCAAACTTGAAAAGGAAGATGAATGATCAGATTCATCTGGATGCTTCTTTCTTAACACATGAAAATCAGGAGGAAAGTGCTGATTTCTATCAGAGTATCCCCCAAAAGAAGATGAAAATCCACAATTCAGATCCAACTGAGGAAGGAGGGGCATGCAATAACTGTAAATGTAGAAAAACTCAGTGTTTGAAACTTTATTGTTCGTGCTTTGCTGCTGGAGTTTACTGCACAGGACCTTGCTCATGTCAAAATTGCTTGAATAATCACATTAATGAAGATAAAGTCCTGGAAGCTCGCAAGAAAATTGTGCCTAAGGAGGACCCCAACAAAAGTGGATGCAACTGCAATAAAACAAGCTGCATGAAGAAATACTGTGAATGCTATAAGGCTGGTGTTGGTTGCTCCCCAAGTTGTAACTGTCAAGGATGTGAGAATATACATGGTAGAAAGGATCGTGTGGCTGGAACAAAGTCTTAG 1101 0.376 MKVASDFNFNQEDGTLHNYLTCLPPLETNENAEATLNSLTFDFSPTTSYDNVLFNTLYDESIVPIRNNPLDTSMSELFSADTNKIHPHEEADNVIPTEDYSPDLSLISSDGSMKDSVEGGNYIQEVGQVEANIEVPDREMQSLALMNRNQIQRWNDEVFRTQELILDRLENRMTITVAKSDEENASNQISRSSLIMPFQDLTNKQLNPPNLKRKMNDQIHLDASFLTHENQEESADFYQSIPQKKMKIHNSDPTEEGGACNNCKCRKTQCLKLYCSCFAAGVYCTGPCSCQNCLNNHINEDKVLEARKKIVPKEDPNKSGCNCNKTSCMKKYCECYKAGVGCSPSCNCQGCENIHGRKDRVAGTKS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4674 366 SMART CXC_2 258 299 IPR033467 -
Psa6g4674 366 SMART CXC_2 316 357 IPR033467 -
Psa6g4674 366 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 154 360 - -
Psa6g4674 366 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 154 360 IPR044522 GO:0003700
Psa6g4674 366 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 319 353 IPR005172 -
Psa6g4674 366 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 261 296 IPR005172 -
Psa6g4674 366 ProSiteProfiles CRC domain profile. 259 356 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4674 Psa-Chr6 406758931 406760912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4674 321 365 CPP Transcription Factor Family AT3G22780 44.444 4.92e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa6g4674 TCR 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4674 - - mtr:MTR_1g103230 182.956