Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4627 ATGGCTGAGGGTCTCGTTCTCCGCGACACCATGCGTTCTCACACTGACATGGTTACCGCCATTGCTACCCCGATCGACAATTCCGATATGATTGTCACCGCCTCCCGCGACAAATCTATCATTCTCTGGCGCCTTACCAAGGAGGACAAGACTTACGGTGTCCCCAGCCGCCGTCTCACCGGTCACTCTCACCTTGTTCAGGATGTTGTCCTCTCATCCGACGGTCAGTTTGCTCTATCTGGTTCATGGGATGGTGAACTCCGTCTTTGGGATCTCAACGCCGGAACCTCTTCCCGCTGA 300 0.55 MAEGLVLRDTMRSHTDMVTAIATPIDNSDMIVTASRDKSIILWRLTKEDKTYGVPSRRLTGHSHLVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSSR* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4627 99 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 99 IPR001680 GO:0005515
Psa6g4627 99 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Psa6g4627 99 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Psa6g4627 99 PANTHER BNAA06G12310D PROTEIN 1 99 - -
Psa6g4627 99 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 99 IPR045223 GO:0015935|GO:0043022
Psa6g4627 99 SUPERFAMILY WD40 repeat-like 10 95 IPR036322 GO:0005515
Psa6g4627 99 Pfam WD domain, G-beta repeat 10 43 IPR001680 GO:0005515
Psa6g4627 99 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Psa6g4627 99 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 99 - -
Psa6g4627 99 SMART WD40_4 52 91 IPR001680 GO:0005515
Psa6g4627 99 SMART WD40_4 4 44 IPR001680 GO:0005515
Psa6g4627 99 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Psa6g4627 99 Gene3D - 4 99 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4627 Psa-Chr6 402369984 402370487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4627 10 97 U-box Gene Family AT2G33340 30.682 6.45e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4627 K14753 - pvy:116140488 182.956