Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4076 ATGGCTATGGCTGGACCATCGTGGTTGGTGGATAAAAGTAGCATTGCAACCAAAATAAGGTGTGCATCGGGAGCAATCGAGAGAGTTATATCGGAAAGCAATCCTACCATAGCTTGCCCCAATTGCCAACATGTTATTGACAACAATAGTGTAACACAAGAGTGGCCTGGACTGCCTATAGGTGTTAAATTTGATCCGTCTGATCAAGAGATAATATCGCACTTACTTACAAAAGTTGGTGAAGGAAACTCAAAACCGCACCCTTTCATCGATGGATTTATCCCTACCATTGATATGGACGAGGGTATCTGTTATACTCATCCTCGATATTTACCAGGTGTTTCGTTCGATGGAAGTGCTTCGCACTATTTCCATCGAGCAGTTAAGGCCTATAATAGTGGCAGTCGAAAGCGTCGAAAAATATATGGTCAAGACGATTCTTGTGATGTCCGCTGGCACAAGACCGGAAAGACGAAACCTATTCTTTTGAACGGGGTTCATAGAGGAAGTAAAAAGGTTATGGTTCTCTATACAACACCAGAGAGTAAAGATTTATCTGGGAAAACTAATTGGATTATGCATCAGTATCATCTCGGGACAAAAGAGAACGAAAAGCATGGAGAGTACGTTGCATCGAAAGTCTTTTACCAGCAGCCGGAGCATGTCAAACTGCGAGGCAAAGGTACTCAGGATGATCTTCAAACCGCTGAAAAAGTGAGTCCTGTCACTCCCAGTTCTGCGACTCGCGAGCCTAGTTGGATCAAAAAGCAACGCCTGGATATCGACCAAGCGCGAGAATCTCATCATTCTCCTGAGACTCCTCCGCTAAACCTTAATGAGTTAGAAAGTCTGTTATTTGATAGTCGGGATGACAATGATGAGCGCACGAATATAGATCTGTCGATGTTAACAACTCCGGTTAATGAAGGGATAGATAACATTGATCTGTCGCAGAATCTATTGGATCCACAACAACTTGCGGAAGCATTTCCCTTGTTTACTGGTTCGATTCAAAGTCAGTTTCCGAATAAGGATGGAGAAAACGGACAACATAATGAACAACATAGTCTTTCTATAAGTGCTCATCTAGGACCAGACCAATCGAATGATGATATCGAAGAGTGGCTAAATCTTGACCGGGACATTGCAAAGAAAAACGATATCGAAGATCACCAAAATCTTGACCTGAACATTGCAAAGACGAATGATATCGAAGATTATCAAAATTTTGACCTTGGCATTGCAAAGGAGAACAATATCGAAGATTACCTAAATCTTGACCTTGACATTGCAAAGAAGAACGATATCGAAGATTATCAAAATCTTGACTGTGACGCACCAACTACCGATTTTCGATTAAGTCAACTGGACTTCATTTCGCAGGATAGCTATATTGCTTGGGGTGGTAACAAGACAATGGAGTAA 1425 0.4182 MAMAGPSWLVDKSSIATKIRCASGAIERVISESNPTIACPNCQHVIDNNSVTQEWPGLPIGVKFDPSDQEIISHLLTKVGEGNSKPHPFIDGFIPTIDMDEGICYTHPRYLPGVSFDGSASHYFHRAVKAYNSGSRKRRKIYGQDDSCDVRWHKTGKTKPILLNGVHRGSKKVMVLYTTPESKDLSGKTNWIMHQYHLGTKENEKHGEYVASKVFYQQPEHVKLRGKGTQDDLQTAEKVSPVTPSSATREPSWIKKQRLDIDQARESHHSPETPPLNLNELESLLFDSRDDNDERTNIDLSMLTTPVNEGIDNIDLSQNLLDPQQLAEAFPLFTGSIQSQFPNKDGENGQHNEQHSLSISAHLGPDQSNDDIEEWLNLDRDIAKKNDIEDHQNLDLNIAKTNDIEDYQNFDLGIAKENNIEDYLNLDLDIAKKNDIEDYQNLDCDAPTTDFRLSQLDFISQDSYIAWGGNKTME* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4076 474 SUPERFAMILY NAC domain 43 217 IPR036093 GO:0003677|GO:0006355
Psa6g4076 474 MobiDBLite consensus disorder prediction 225 252 - -
Psa6g4076 474 Pfam No apical meristem (NAM) protein 59 198 IPR003441 GO:0003677|GO:0006355
Psa6g4076 474 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 3 469 - -
Psa6g4076 474 ProSiteProfiles NAC domain profile. 58 217 IPR003441 GO:0003677|GO:0006355
Psa6g4076 474 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Psa6g4076 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 469 IPR044799 GO:0003700
Psa6g4076 474 MobiDBLite consensus disorder prediction 233 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4076 Psa-Chr6 357555710 357560272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4076 21 222 NAC Transcription Factor Family AT1G28470 50.000 3.34e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g4076 NAM 7.5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4076 6 357555710 357560272 Psa6g4076 6 357555710 357560272 ECH