Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4072 ATGCATATTGATATCACCATGCAAACTCATCACTTCTCATCGTCTTGTAAAAGTGCCTCCTGCACCAGTTTAGAAGATGAAGATTCAATTTTCCTTTCTCTTGCTCCTCCTGGTCACCAGCATTTACCACCTTCCAAACTCTCATCATCCCCTCATATCCCTCCATTGCAACTAAATACTCCTACTTCCACTACCGCACCTCCTCAGTTTTGGATCCCTTCTCCTGCTCAAATCCTTATTGGTCCCACCCAGTTTTCTTGCACTGTCTGCAACAAAACATTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGGACAGGACCTGAATCACTGAGAGGGCCAAAACCAGCGTCGTCTTCATCCATACTGAGACTTCCGTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAAACTATCCAAGGTCAAGACCGCTGAAAGATTTCAGGACACTTCAAACACACTACAAGAGAAAGCATGGCGGGAAATCGTTCGAGTGCAGGAAGTGTAGGAAGACATTTGCTGTGAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGACTTCAAACACAAAAGATCGCTTAAGGATCATGTTCGTACTTTCGGTAGTGGCCACGCTCCACACACGTTGGAATCTTTTAGTTTTGATGAACATCAAAAAGAAAATGAAAATTTCAAGGAAGAAGAAGAGGAAGAAAATGGAAGTGAAGATGAAGAAGAAGACAATGACAGTGAAGTTGCTTTTACTTTCAATTAA 810 0.4235 MHIDITMQTHHFSSSCKSASCTSLEDEDSIFLSLAPPGHQHLPPSKLSSSPHIPPLQLNTPTSTTAPPQFWIPSPAQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRTGPESLRGPKPASSSSILRLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRTFGSGHAPHTLESFSFDEHQKENENFKEEEEEENGSEDEEEDNDSEVAFTFN* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4072 269 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Psa6g4072 269 SMART c2h2final6 135 167 IPR013087 -
Psa6g4072 269 SMART c2h2final6 85 107 IPR013087 -
Psa6g4072 269 SMART c2h2final6 172 192 IPR013087 -
Psa6g4072 269 Coils Coil 233 256 - -
Psa6g4072 269 MobiDBLite consensus disorder prediction 230 269 - -
Psa6g4072 269 PANTHER ZINC FINGER PROTEIN WIP6 59 261 - -
Psa6g4072 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Psa6g4072 269 PANTHER ZINC FINGER PROTEIN WIP2 59 261 IPR043584 GO:0003700|GO:0010468
Psa6g4072 269 Pfam Zinc finger, C2H2 type 85 104 IPR013087 -
Psa6g4072 269 MobiDBLite consensus disorder prediction 244 263 - -
Psa6g4072 269 Gene3D Classic Zinc Finger 84 107 - -
Psa6g4072 269 SUPERFAMILY beta-beta-alpha zinc fingers 81 106 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4072 Psa-Chr6 356719381 356721191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4072 26 228 C2H2 Transcription Factor Family AT1G13290 68.376 2.10e-108 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g4072 zf-C2H2_6 0.00062 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4072 6 356719381 356721191 Psa6g4072 6 356719381 356721191 ECH