Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4070 ATGTCTTCCACCCTCACAATGCAACGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAACAAGAACGTCTTAAGATTCAGGTCTTTCCCAAGGAACTTCCCCTTTCGTTAGAACTCGTTACACAAGCTATTGAGACTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTACAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGAAGGACCTGTTTTGGAAGAGTTTATTCCGATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTGTATGATGATGATGATGAAGAAGAAGATGAGCATCATTCTCATCATAAGCAGCAAAAAATTTCAATGGATGATAATAAGAATTCTGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTTCATCTGAGGAGGATGCTACTAGGAAAGTGTCCGTGTTAGAATTGAAGAGAAATGGAAGTGTTGGTGGTGCTTTTCACCCGTTCCAAAAAGACGATAGAGTCAACAACAAGACATGTGAGTTTTTGAGTAAAGGACAACCCTCTTTGACCGGTGTAGCTGCTGCGAGTTCTAATGTGGCCACGACTGTCACTAGTAACAATGCTGGAAACACCAAAAGAGAGGATAAAGAGGAAAAGAGAAAGCAGCGACGATGCTGGTCGCAGGAGTTGCACAAACGCTTCTTGCAAGCACTTCAACAACTCGGAGGTGCAGATTCTGCTACGCCAAAGCAAATCAGAGAGCTAATGAACGTTGACGGTCTCACAAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACATACAAGAAGACCGAGTTCAACGAATAACGAAAGTGCCAAATCACAAACAGCAACACCTTTCGTCCTTGTAGGAAACATTTTTGTCCAGCCAACAGAATATGGTGGAGTAGGTTCATCAACAACATCAGGGGAAATGACAAAGGTGGTTGCACCTTCTGGTATTTACGCACCGGTGGCCACACATCCTCCGGTTACTACAATAAAGAAGCTGGAGTTTAAGAAGTTTGAGAATTCAATCTCAGAAGAAAGGGGTAACAATAATAATAATAACAGTGAAGGTGCTGTTCATTCAAATTCACCTGCTTCATCATCCTCTACACATACTACTACTAATAATTCCCGTGGCTTTTGA 1188 0.4091 MSSTLTMQRFKMGFSDYIQALEQERLKIQVFPKELPLSLELVTQAIETCRQQLSGTTTEYNLNGQSECSEQTTSTEGPVLEEFIPIKKRASPYCEQVYDDDDEEEDEHHSHHKQQKISMDDNKNSDKKKSDWLRSVQLWNSDPSSEEDATRKVSVLELKRNGSVGGAFHPFQKDDRVNNKTCEFLSKGQPSLTGVAAASSNVATTVTSNNAGNTKREDKEEKRKQRRCWSQELHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSSTNNESAKSQTATPFVLVGNIFVQPTEYGGVGSSTTSGEMTKVVAPSGIYAPVATHPPVTTIKKLEFKKFENSISEERGNNNNNNSEGAVHSNSPASSSSTHTTTNNSRGF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4070 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 281 IPR017930 -
Psa6g4070 395 MobiDBLite consensus disorder prediction 99 129 - -
Psa6g4070 395 Pfam Myb-like DNA-binding domain 226 277 IPR001005 -
Psa6g4070 395 MobiDBLite consensus disorder prediction 360 395 - -
Psa6g4070 395 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 391 - -
Psa6g4070 395 MobiDBLite consensus disorder prediction 105 129 - -
Psa6g4070 395 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Psa6g4070 395 MobiDBLite consensus disorder prediction 203 227 - -
Psa6g4070 395 MobiDBLite consensus disorder prediction 213 227 - -
Psa6g4070 395 Gene3D - 223 281 - -
Psa6g4070 395 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 224 279 IPR006447 GO:0003677
Psa6g4070 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 391 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4070 Psa-Chr6 355973038 355975709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4070 16 339 G2-like Transcription Factor Family AT1G68670 47.633 1.69e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g4070 Myb_DNA-binding 2.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4070 6 355973038 355975709 Psa6g4070 6 355973038 355975709 ECH