Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1250 ATGGTGAAGCCATTAGCAACAAACACAAGTGAAAAGAAACCAAGACCAGAAAAACAACAAGCTGTTAATTGTCCAAGAAGGTACTGGACTCAAGGTGGATCCATTAGAAACATTCCCGTGGGAGGTGGAACAAGAAAAAACAACAAGTTTTTCAGCATTGGAGCTTCTTACTGGGATAACTGCTTCAACTACAAGGGGTTTTCATTCTTTTATGCCGATGGGATTGGTGGAAATGGTTATGGAAATGAAGGAAGGGTTTTGTTTCCTTTTGAGGATTTAAAACAGGATTTGGATCAGAATAACAATAAGGGAGATCAACAAGGTTATACAACTGGGTTTTGGAATGGAATGTTGGGAGGAGGAGGAGGATATAATGGTAGTGGACTTAGAGTATATCGGCGGGCGTGTTGTGATGAGGAGAAAGACGGTGAAGGGAAGAATCAATCTCTAGCGGAGCTGTTGGAACCTGATATTTCTGAATTCAGGGACATATTCTTAAGCACACACTCCTAA 513 0.4113 MVKPLATNTSEKKPRPEKQQAVNCPRRYWTQGGSIRNIPVGGGTRKNNKFFSIGASYWDNCFNYKGFSFFYADGIGGNGYGNEGRVLFPFEDLKQDLDQNNNKGDQQGYTTGFWNGMLGGGGGYNGSGLRVYRRACCDEEKDGEGKNQSLAELLEPDISEFRDIFLSTHS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1250 170 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g1250 170 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 50 IPR045174 GO:0003700|GO:0006355
Psa6g1250 170 Pfam Dof domain, zinc finger 9 49 IPR003851 GO:0003677|GO:0006355
Psa6g1250 170 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 26 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1250 Psa-Chr6 54440733 54444532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1250 11 49 C2C2-Dof Transcription Factor Family AT4G24060 46.970 1.48e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa6g1250 zf-Dof 6.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1250 - - mtr:MTR_1g077600 69.707