Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0342 ATGAGTAGCATCTTTGCAAAATTATTGTTTTCAACTTTGTGCATGCTCTTTCTGCTCAAAACACACTCTTTAGTATTTGCAGACCAAAGACTTGCTATAGTGTATCCAGTGATCCAAAACTTCAAATCCATGATCACTTCAGATCCATTAGGTGTTACAAAATCATGGATAGGTTCTGATATATGCAACTACAAAGGCTTCTACTGTGATAATCCACCAGATAACAACTCAGCTATTGCTTTAGCTTCTATAGATTTCAATGGCTTTCATCTTAGTGCTTCAACACTTGATGGTTTTATCGATAAACTTCCTGATATTGCTCTTTTTCATGCAAATTCTAATAACTTCATTGGCACAATCACTTCTCAAATCACCAAACTTCCTTATCTTTATGAGCTTGATTTAAGCAATAACCGATTTTCAGGTCCTTTTCCTATAGCTGTTCTTGGCATGAACACTTTAACATTCTTGGATATAAGGTTCAATTTCTTCTCCGGTGGAGTTCCGCAACAGATCTTCACACAAAACCTTGAGATTCTTTTCATCAATAACAATCTTCTTACACAAAAGTTACCTGAAAATTTAGCTTCAAGTTCGATATTCTTACTCACTTTGGCTAACAACAAATTCGTCGGTCCGATACCGAGGAATCTTCCGAAAGCTTTGTCGAGTTTAACCGAAGTTGTTTTACTAAACAATGAGTTAACAGGCTGTTTGCCTCATGAGATAGGCTATTTTCAAGAGGCTGTAGTTTTTGATGTTGGAAATAATCAACTTACTGGTCCTTTACCGTTTTCTCTAAGCTGTCTTGAGAAAGTTGAGGTTGTTAATTTGGCTGGTAACATGTTTTATGGAATTGTTCCAGAAATTGTGTGTGCAGGTTTGGTGAACTTGGTGAATTTTTCATTGTCAGATAACTATTTTACTCATGTGGGACCTTTTTGTAGGATGTTGATTCAAAGAGGTGTTCTTGATGTTGGGAAGAATTGTATTCATGATCTTCCTTTTCAAAGATCAGTGATGGAGTGTGCTGATTTCTTTGCTAAACCAAAGATTTGTCCATTTATGTGGTTTCATAGTTTCTTTCCTTGTAAGTTTCCATTTCAAAACTCTCAAGTTTCTTCTATTCCTTAG 1134 0.3571 MSSIFAKLLFSTLCMLFLLKTHSLVFADQRLAIVYPVIQNFKSMITSDPLGVTKSWIGSDICNYKGFYCDNPPDNNSAIALASIDFNGFHLSASTLDGFIDKLPDIALFHANSNNFIGTITSQITKLPYLYELDLSNNRFSGPFPIAVLGMNTLTFLDIRFNFFSGGVPQQIFTQNLEILFINNNLLTQKLPENLASSSIFLLTLANNKFVGPIPRNLPKALSSLTEVVLLNNELTGCLPHEIGYFQEAVVFDVGNNQLTGPLPFSLSCLEKVEVVNLAGNMFYGIVPEIVCAGLVNLVNFSLSDNYFTHVGPFCRMLIQRGVLDVGKNCIHDLPFQRSVMECADFFAKPKICPFMWFHSFFPCKFPFQNSQVSSIP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0342 377 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 376 - -
Psa6g0342 377 PANTHER BNAA09G53810D PROTEIN 19 376 - -
Psa6g0342 377 Gene3D Ribonuclease Inhibitor 36 201 IPR032675 -
Psa6g0342 377 Pfam Leucine rich repeat N-terminal domain 39 70 IPR013210 -
Psa6g0342 377 SUPERFAMILY L domain-like 37 332 - -
Psa6g0342 377 Gene3D Ribonuclease Inhibitor 202 343 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0342 Psa-Chr6 10579339 10581062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0342 23 352 Leucine-rich Repeat extension Gene Families AT3G24480 42.424 5.36e-84 262