Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0186 ATGTATCCGAACCAAGCGTTTTCGTCGGGATCTTACGCCGAGATGATTTCTGGGAACACTTTGTTACCTCATAACTATAGTGAATCTGTAGGAGGACAAAATGAGTTGAAGTTTATCGCGTCTATGGACGACTCGATGAATATGCAGTCTATTGATCAAGGGCATTCAAATGCTGCTACGACCGATCCAACGACGCAATTTGGACTCGTTGAGAGCGATCAAAATGTACAATGTCAAGGCTTGTCTCTTAGCCTTGGAACAATGATGCCTTCCTTTCAATATCAGTATCCCGGAAACGGTTTCACCTCGCTAATGAATGCTCAGATTTCAAATTTAAAAGGGTCTGTGTCTCTTAAAGATGATGAGGATTTGAGAAATGCGGAGTGTAATGCATATCAGAATTCTGTCAAAAGGGAGGGTTTCTATAATCCGCACTCTTCGATAGGTCTGAACGAAGGTCAATCTGATCCATGCTTGCACGGATCAGCGATTCTTCCGAACAATGGCCTTAACGCACATTACCTTAAGGCGGCACAGGAATTGCTTGATGAAATAGTTAATGTTCGAAAGACTTTGAAACAAACTGGATTGGAAAAACAACAAAGTTTTCGTGATACTGGTTTAGATGGTTCCAGAGATTCTGATGGAAAATCTACAACCCAATCTATGCAAATTTCTTCTGGTCCTAATGGTTCTAATGCAAACAACTCTTCGGCTGAGCTGTCGCCTGCGGAGCGACAGCATTTCTTAGATAAGAAAACAAAACTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACCGACAGTACTGTCATCAGATGCAGATTGTTGTATCGTCTTTCGACATGGTTGCTGGTTGTGGAGCAGCGGAACCATACACGGCTCTTGCTTTGCGCACAATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGCGGTCAAATTCAAGTGACTCAAAGAAGTCTCGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTCGATCAGCAGCTTAGACAACAGAAAGCTCTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGAGGACTTCCCGAAAGCTCTGTTTCAATACTCCGTGCGTGGCTCTTCGAGCATTTCCTTCATCCTTATCCTAAGGATTCGGAGAAAATTATGTTGGCAAGACAAACAGGCTTGACTCGAAACCAGGTAGCGAATTGGTTTATTAATGCGAGGGTGCGTCTATGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTTGGCGATTCCGAGACAAGCAGCAATCTTTTATCAGAAAACACACCGAAAGCTCCAAGAGACGAAGATCTTCGAGTGTGGGATGATAAAAGAGATGAGTCTCATGACAAGTTAATAACCATTGATAACGTTCAACAACAACAAGGTCAAATCGCAGGGTTGAAGCTGGATCATGCATCCTCCTCGACCACCACGGGGACAGAATTGGAAAGAGGGAATCAAAGTAATGATCATTGGACAAATGTGATGGATTCTAGAATCGGGAAAATGCAGGGTGATCAACAAAGGTTTAACATGAATAATAGTCCGTATTCAAATGCACCTATCTCGATAAACCAAAATGGCGAAAACTGCATAATGGATTCTACTCCTACTACTTATGATGATTTATCCGAGTTGAGTAACTTCGCTGTTGGTGGACATGTCTCGCTTGCTTTGGAGTTGAGGAACTCGGAAAGTGATGGATTTGGTTTGTCGAATGATGACGTCAATAAAAGGCGTAATCAAACATTGGCTTCTTCGCCGGATAATGATTTGTTAGATTATCATTTCACAGACAATGGAAAGCAACAACATAAGTTTGGCAATCCTCATTTATTACACGAGTTTGTTGTCTGA 1890 0.4233 MYPNQAFSSGSYAEMISGNTLLPHNYSESVGGQNELKFIASMDDSMNMQSIDQGHSNAATTDPTTQFGLVESDQNVQCQGLSLSLGTMMPSFQYQYPGNGFTSLMNAQISNLKGSVSLKDDEDLRNAECNAYQNSVKREGFYNPHSSIGLNEGQSDPCLHGSAILPNNGLNAHYLKAAQELLDEIVNVRKTLKQTGLEKQQSFRDTGLDGSRDSDGKSTTQSMQISSGPNGSNANNSSAELSPAERQHFLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTPKAPRDEDLRVWDDKRDESHDKLITIDNVQQQQGQIAGLKLDHASSSTTTGTELERGNQSNDHWTNVMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNGENCIMDSTPTTYDDLSELSNFAVGGHVSLALELRNSESDGFGLSNDDVNKRRNQTLASSPDNDLLDYHFTDNGKQQHKFGNPHLLHEFVV* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0186 629 Pfam Associated with HOX 171 313 IPR006563 -
Psa6g0186 629 MobiDBLite consensus disorder prediction 199 243 - -
Psa6g0186 629 SMART prehox3 159 314 IPR006563 -
Psa6g0186 629 SMART HOX_1 355 419 IPR001356 GO:0003677
Psa6g0186 629 MobiDBLite consensus disorder prediction 213 243 - -
Psa6g0186 629 Pfam Homeobox KN domain 372 411 IPR008422 GO:0003677|GO:0006355
Psa6g0186 629 Coils Coil 175 195 - -
Psa6g0186 629 MobiDBLite consensus disorder prediction 424 444 - -
Psa6g0186 629 SUPERFAMILY Homeodomain-like 356 422 IPR009057 -
Psa6g0186 629 ProSiteProfiles 'Homeobox' domain profile. 352 415 IPR001356 GO:0003677
Psa6g0186 629 CDD homeodomain 355 416 IPR001356 GO:0003677
Psa6g0186 629 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 591 - -
Psa6g0186 629 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 591 - -
Psa6g0186 629 Gene3D - 352 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0186 Psa-Chr6 5775469 5779874 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa6g0186 POX 2.4e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0365 5 27366198 27368673 Psa6g0186 6 5775469 5779874 PCT