Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0144 ATGATGAAATCAGGGTTGGGAAATGAAGAGAAAAAACAGTTGAAAAAACCAGCACAAGCTAGTTCAAGAAAAGGGTGCATGCGAGGCAAAGGTGGACCTGAAAACGCAAGCTGCACTTACAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAAATCCGCGAACCTAACCGCGGCGCTCGTCTCTGGCTTGGTACTTTTGAAACTTCTCACGAAGCTGCTTTAGCTTATGATGCTGCTGCTCGCAAGCTTTATGGTTCTGAAGCAAAACTCAATCTTCCAGATCTTTCTACTCCTTCTGCACCCTCTGCAACAATATCACAAACACCTGAAATGCAACATCAACAAATTCAAATTCAACCCAACCCCAACAACAACAACAGCTTCAATATTTCAAATGTCAATTCATGCAACAACATCAACATGAGCAACATGAGCAACAACATCAACATGAACAACATAAGCAACAACAACATTAACAACATCAACAACACTGTTTTTGTTGGTGACATTGGACCCATATACAACAGTGACAATTCCATTCTGCCATTTCCAATGGATGCTACAAACACAATGGAACAACAACAGGTTGATCAAAGCTACAATAATAATAATATTTCAAATGATTCATTTTTTGGAACAATGAATTATGAAAGTACCATGCCAGTGATTGATGATGATTCAATCTGGAGAGAGGCTGCTATGTCTTTGGATGCTGCAATTTCAATGGATTATCCAATGATCAGTGATCCTGATGGATTATATAATTCAGGTGGAAATTTTAGTGGTTGGGATTCTTTACAAACACCATGGTGCATGTAA 828 0.3973 MMKSGLGNEEKKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPDLSTPSAPSATISQTPEMQHQQIQIQPNPNNNNSFNISNVNSCNNINMSNMSNNINMNNISNNNINNINNTVFVGDIGPIYNSDNSILPFPMDATNTMEQQQVDQSYNNNNISNDSFFGTMNYESTMPVIDDDSIWREAAMSLDAAISMDYPMISDPDGLYNSGGNFSGWDSLQTPWCM* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0144 275 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Psa6g0144 275 MobiDBLite consensus disorder prediction 1 32 - -
Psa6g0144 275 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Psa6g0144 275 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Psa6g0144 275 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Psa6g0144 275 MobiDBLite consensus disorder prediction 1 17 - -
Psa6g0144 275 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 258 - -
Psa6g0144 275 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Psa6g0144 275 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Psa6g0144 275 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Psa6g0144 275 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 258 - -
Psa6g0144 275 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0144 Psa-Chr6 4393102 4394668 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g0144 AP2 9.2e-15 CL0081