Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0117 ATGGAAAACGAAGATTTGAGGTCAGGGACGAAAAAGAAGAAGAGATCCAAACCGATTGAAATTGATTTTGATTCAGATAACGATAAACCAATTGGATCGTTTTTAAAGTTAAAGAGGAATAAGAAGAAGGTTAGCTTTGCATCAGAGGGTTCTTGTGGTGGAGATTCTGTTAAGGAAAAAGAGAATTCTAGGGTTATGGATGATAATGATACTTTGGCTACCTTTAGGAAAAGGTTGAAGGGTCCAAAGAGAGATCAGGGATTTGAGGCCATGCCTGCTTTGAATGTTTCCGTCGAGGGTAATGGCGGATCTGGGAAATGTGATGATGACATGCAACTGCATCATGATTCTGATCAGCATATGGAAGAATCCTTGTCTACGATTTTCCACAAGGCGCAATCGTGTTCTGTTAGGAAATCCCGTGCCGCGATGGGTTCGAAGCAGAAAAAACGGAATCGGAATGTGGATAGTGGGTTGAAACATGGTTCCAGAAGTTTAACAGAAAATGTAGATTCTGTGGTTGAAATTAGATCTGGATCTGCTTCTGCCTTAAAATCGGTTGAGAGAAATCATGAGTCTGATACGTTTTGTTCAGTATCTGTGATGGAGAATCAAAAGGGTGGCGGTGACTGTTTGCAAGAGGAAAAGGCGAAGGGTATTTGTGATTCAAACATTCCTGATGAACCGTCGGTTGATCACTCTAACTCAATCATTGCCTGCGATGGCGATGGACAGCAATTGTCAAGTGTACAAGTTGAAAATGTTTGTGGTGCTTCTGATGAAATGGTTACATTGCAAGAAAAAATTATCGATAATAGTTTGAATCAGTGTTCTTCCATGTTACAAGATGTTGAAATAATTGATATTGGCTCTCTCTCTAAAGTGGGGGAAGGGGTATGTGGACTTTCTGAGACTGGAGAGCTTGAGAATAATAGATCAATTGATGAAATAGCAGAAGAACAGGTGTGTAATGGTGCTTCAGAAGGAGGCATTTCTTCTTCAGCAAAGAAAGAAGTTTTGTTAACTTGTCACACTAAGCACTTGATTAAATTAAATGAAAATAATCCCATTGTTTCTGGAAAAACTTTCCAGGAATCCTCAATCAATGGAGGTAAAAAATTGGAAACTGAGTCTGTTTCTGGTAGAGATTGCTATGATTATAGTCCTTTAGAAACAAATGCTGAAGTGCAAGATGTTGTTGTAGGCTGCTCACCTGAAAAACATGAAGCAATTGCCAGTGGTAGTTTATCCTCTATTTTGCCTAACGATGCCAATGAATCTGAGTTGATTGTCCAGTCAAATCACCCGGACAAACCTTTGGAAATGTGTAATATTCCAAAATACTCTAATGCACCCATTATGAAGTGCAGCTATACGTTAGATCCAAATCAATCCGATGGGTCCTCTATACAATCTTCAATTCCAGATGAAAATGGAAACACTACAGAATATCATGCCTCTGTGTCTGATTTTGCTGACAATGGTGGTAAGATATCTGGCATTCCTCGGGCAGCACGAAAGACCAAAATGAATAAGCACGGCGACATGACTTATGAGGGAGATGCCGATTGGGAGATTTTAATAAATGATAAAGCCCTAATTGGAAACCAAGATGCTGCAGACGGTGAACGTACTCTTAGAGCAAGAGTGAAGCAGGATTCCTCTCTGAATGCTGTTGAGGACTCTGAAAGTGTTGCAGTAGCAGCAGTATCTGCTGGACTGAAAGCTCGTGCAGTCGGTCCAATTGAGAAAATAAAATTTAAGGAGATCTTGAAGCGTAAAGGTGGTCTAAAGGAATATTTAGATTGCAGGAATAAGATCTTAAGCCTATGGAGCAGTGATGTCACACGTATTTTACCTCTTGCTGAATGTGGAGTTAGTTATACCCGTTCTGAGAATGAAAGTCCCCGTTCTTATCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAGTTGCCTCTCAAAAGGAGAATGTTGAGAGCTGTGCAAGACATTGTTACAAACTTGTAAAAGAAAAAGGATTCGAGGAAAGTTCTACGGCTTCATTGGCCGGCTCTGAAGATGGAGTTCCTTTTAATGTTGGTCAGACTAAAATGTCATATGCTTCTATGGATATTAACAATGATCTAATAAAGGATTTTGAAGACCTGACAACTAAAGCTACAGAGGGCATGATGCATGTTGACGAAGTGATGACAGATTCATCAAACATGGCACAACATGAAAGAAAAAATTATGATGAACAGGAAAATGTTGGGATTCAGGATGGAGTCGGTGGAATTATACATTTCAATGATAACAGTGCTGTTCCTTCTTTTAAATTTCCCGATTGCAGATTGACTTCTCTTGTTGCTACAAAACACAACAGTGAATCTAAATTTGTTAAACATGCATTAGGGGATCAGATAGGTGATACTCTGCAGTCTGATTTAGAGGCTAGAAAGAGAGTGATTATAATTGGAGCTGGTCCTGCTGGGCTAACTGCTGCTCGCCACTTGAATCGCCAGGGGTTTACTGTAACTGTGCTTGAGGCTAGGAACAGGATAGGAGGCCGGGTATTTACAGATCACTCGTCTCTTTCTGTCCCTGTGGATCTTGGTGCTAGCATTATAACAGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCGTTGGTTTGTGCTCAGCTGGGCCTTGAATTGTCAGTGTTAAACAGTGACTGCCCTCTTTATGACACAGTGACTGGTCAAAAAGTTCCTGCAGAAATGGACGAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTACTGGTTGTTGCTCGGAAAGGTGAACAAGCAATGAAAATGTCTCTTGAAGATGGTTTAGAATACGCCCTTAAGATTCGCCGCATGGGACTTTCTGAAGGTAGTGAAGAAACTAAGCAAAATTTTGATGAGGAGATTTTGGATCCTCGGGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGCTGTGCTGCTTTGCTTAAAGAAGTTTCTCTTCCCTATTGGAATCAAGACGACGTGTATGGAGGATTTGGGGGACCTCATTGTATGATCAAAGGAGGTTATAGCAATGTTGTTGAGTCTCTTGGAGAAGGGCTCGCTATTCATATGAACCACACTGTCACAAATGTGTCATATGGTATCAAAGAACCTGGTGAGAATAATAAAGTCAAAGTTTCTACATTGAATGGCAATGAATTTTTTGGAGATGCTGTCCTCATTACTGTCCCACTTGGCTGTTTGAAAGCTGGAACTATACAGTTCTCCCCCTCTTTGCCGGAGTGGAAATGTTCTTCCATTCAGCGTCTTGGCTTTGGAGTTCTCAATAAAGTGGTTTTAGAATTTCCTACTGTGTTTTGGGATGATGCGGTGGACTACTTTGGAGCAACAGCTGAGGATAGAAGCAAAAGAGGTCACTGCTTTATGTTCTGGAATGTCAAGAAAACTGTTGGGGCTCCTGTCCTTATAGCATTAGTGGTTGGTAAGGCAGCCATAGACGGTCAAAGTTTAAGCTCTTCTGATCATGTCAACCATGCATTAAAGGTTCTTCGGAAACTTTTTGGGGAGACTTCAGTTCCTGATCCAGTTGGATATGTTGTGACTGATTGGGGTAGGGATCCCTATAGCTTTGGTGCTTACTCTTATGTTGCTGTTGGAGCATCAGGAGAAGACTACGATATCTTAGGAAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGCAAAGAGCACCCTGACACTGTTGGTGGTGCAATGATGAGTGGACTACGGGAGGCTGTTCGAATAATTGACATATTGAACACCGGAAATGACAATACTGCAGAGTTAGAGGCATTGGAAGCTGCACAGGGGCAGTTGGACACTGAAAGGAATGAAGTTAGGGACATAATGAAGAGACTTGATGCAGTTGAGCTTTCTAGCATACTATATAAGAACTCTTTTGAGGGTGCTCAAATCATAACCCGAGAAGCTTTATTAAAGGAAATGTTTCTCAATGTGAAAACCAATGCTGGGCGCTTGCATGTGGCCAAACAATTGCTAAGTCTTCCTGTAGGAAACTTGAAGTCCATTGCTGGAAGTAAGGAGGGGCTAACTGTTCTCAACTCCTGGATACTGGACTCAATGGGCAAAGATGGCACCCAACTCTTGAGGCATTGTTTGCGCCTTCTTGTGCGTGTATCGACTGATCTAGGTGCTGTACGCTTATCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACTAGCCGTGATATTCGAGCTATAGCTAGTCAATTGGTCAATGTATGGCTTGAAATCTTTCGCAAGGAAAAAGCTTCTAATGGGGGATTAAAGTTGTCAAGACAAATAACTACTCTAGAATTATCAAAGAGAAAATCTTTAAAAGATTCAGCGTCAGGGAAGCCTCCTCTCAGCATACATCAGAATGCCGTTGAGAATAAAGAAGGCTTGCTGAATCCTGTATCTGCTGGAAGCAATTCACCTTCCACCACACACGCAAGGAAATTGCACAGCAAACAAGGAAGACAACAATCAGTATGTGACTCAAGGCATGAAGTCAGTTCTTCCAGGTCCCAAGGTTCAATAGATAAAATAGTTACTAAGGAGGAAAATAAACGCTATGCTATGTCTGAAGAAGAAAAGGCTGCTATAGCTGCTGCAGAAGCTGCCCGTACTAAAGCAATTGCTGCTGCTGAGGCATATGCCTCTGCAGAAGCTAGGTGCAGTACACTGTCACAGCTTCCAAAGATACCCTCATTCCATAAATTTGCTAGACGAGAGCAGTATTCACAAAATGATGAGATTGATAGTAGAAAAAAGTTGCCCGGTGGTTTTTTCGGAAGGCAAGATTGTGTTTCCGAGATCGATTCTAGGAATTGCAGAGTTAGGGAATGGTCTGTTGATTTTTCCACCGCTTGTGTTAATCTTGATAGTTCTAAAATACCGGTTGACAATCTCTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCGGAGAGCGCTCGGGAGAAAGTGCTGCTGTGGACAGTAATCTATATACAAAAGCTTGGATTGACACAGCTGGTGATGGGGTAGTAAAAGACCACCTTGCCATAGAGAGATGGCAATCTCAAGCAGCTGAAGCTGATTCTTATTTTTCTGATCAAATAAATCATTTGAAGGATGAGGAGGATTCAAATGCCTATTCAAGGTTACCCAGCTGGAAACATGATGGTGTAATAAATGAGAGTTCTGTTTCTCAGGTTACTGTAAATAAGGAAGGGTCCTTCAAAGGTCATTCTCGAGGAGCAGATCATATTAAACAGGCTGTTGTTGACTATGTTGGATCACTACTTATGCCCCTATATAAGGCTAGGAAACTAGACAAGGATGGATACAAGGCAATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCAACGGATGCAGAAAAAGGCATGACTGTTCGTGAGTTTCTAGACTTTAAGCGAAGGAATAAGATTCGCTCGTTTGTGGATATATTGATCGAGAGACATATGGCAACAAAACCGGGTACAAAATCATAA 5625 0.4144 MENEDLRSGTKKKKRSKPIEIDFDSDNDKPIGSFLKLKRNKKKVSFASEGSCGGDSVKEKENSRVMDDNDTLATFRKRLKGPKRDQGFEAMPALNVSVEGNGGSGKCDDDMQLHHDSDQHMEESLSTIFHKAQSCSVRKSRAAMGSKQKKRNRNVDSGLKHGSRSLTENVDSVVEIRSGSASALKSVERNHESDTFCSVSVMENQKGGGDCLQEEKAKGICDSNIPDEPSVDHSNSIIACDGDGQQLSSVQVENVCGASDEMVTLQEKIIDNSLNQCSSMLQDVEIIDIGSLSKVGEGVCGLSETGELENNRSIDEIAEEQVCNGASEGGISSSAKKEVLLTCHTKHLIKLNENNPIVSGKTFQESSINGGKKLETESVSGRDCYDYSPLETNAEVQDVVVGCSPEKHEAIASGSLSSILPNDANESELIVQSNHPDKPLEMCNIPKYSNAPIMKCSYTLDPNQSDGSSIQSSIPDENGNTTEYHASVSDFADNGGKISGIPRAARKTKMNKHGDMTYEGDADWEILINDKALIGNQDAADGERTLRARVKQDSSLNAVEDSESVAVAAVSAGLKARAVGPIEKIKFKEILKRKGGLKEYLDCRNKILSLWSSDVTRILPLAECGVSYTRSENESPRSYLIREVYAFLDQYGYINVGVASQKENVESCARHCYKLVKEKGFEESSTASLAGSEDGVPFNVGQTKMSYASMDINNDLIKDFEDLTTKATEGMMHVDEVMTDSSNMAQHERKNYDEQENVGIQDGVGGIIHFNDNSAVPSFKFPDCRLTSLVATKHNSESKFVKHALGDQIGDTLQSDLEARKRVIIIGAGPAGLTAARHLNRQGFTVTVLEARNRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLVCAQLGLELSVLNSDCPLYDTVTGQKVPAEMDEALEAEYNSLLDDMVLVVARKGEQAMKMSLEDGLEYALKIRRMGLSEGSEETKQNFDEEILDPRERRVMDWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGPHCMIKGGYSNVVESLGEGLAIHMNHTVTNVSYGIKEPGENNKVKVSTLNGNEFFGDAVLITVPLGCLKAGTIQFSPSLPEWKCSSIQRLGFGVLNKVVLEFPTVFWDDAVDYFGATAEDRSKRGHCFMFWNVKKTVGAPVLIALVVGKAAIDGQSLSSSDHVNHALKVLRKLFGETSVPDPVGYVVTDWGRDPYSFGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDNTAELEALEAAQGQLDTERNEVRDIMKRLDAVELSSILYKNSFEGAQIITREALLKEMFLNVKTNAGRLHVAKQLLSLPVGNLKSIAGSKEGLTVLNSWILDSMGKDGTQLLRHCLRLLVRVSTDLGAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEIFRKEKASNGGLKLSRQITTLELSKRKSLKDSASGKPPLSIHQNAVENKEGLLNPVSAGSNSPSTTHARKLHSKQGRQQSVCDSRHEVSSSRSQGSIDKIVTKEENKRYAMSEEEKAAIAAAEAARTKAIAAAEAYASAEARCSTLSQLPKIPSFHKFARREQYSQNDEIDSRKKLPGGFFGRQDCVSEIDSRNCRVREWSVDFSTACVNLDSSKIPVDNLSQRSHSNEIASHLNFGERSGESAAVDSNLYTKAWIDTAGDGVVKDHLAIERWQSQAAEADSYFSDQINHLKDEEDSNAYSRLPSWKHDGVINESSVSQVTVNKEGSFKGHSRGADHIKQAVVDYVGSLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKGMTVREFLDFKRRNKIRSFVDILIERHMATKPGTKS* 1875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0117 1874 MobiDBLite consensus disorder prediction 1 25 - -
Psa6g0117 1874 Pfam SWIRM domain 575 655 IPR007526 GO:0005515
Psa6g0117 1874 MobiDBLite consensus disorder prediction 139 162 - -
Psa6g0117 1874 MobiDBLite consensus disorder prediction 1509 1551 - -
Psa6g0117 1874 Pfam Flavin containing amine oxidoreductase 831 1283 IPR002937 GO:0016491
Psa6g0117 1874 SUPERFAMILY Homeodomain-like 563 660 IPR009057 -
Psa6g0117 1874 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1381 1465 IPR035441 -
Psa6g0117 1874 SUPERFAMILY FAD/NAD(P)-binding domain 820 1286 IPR036188 -
Psa6g0117 1874 PRINTS Adrenodoxin reductase family signature 822 844 - -
Psa6g0117 1874 PRINTS Adrenodoxin reductase family signature 845 858 - -
Psa6g0117 1874 MobiDBLite consensus disorder prediction 1509 1554 - -
Psa6g0117 1874 ProSiteProfiles SWIRM domain profile. 565 665 IPR007526 GO:0005515
Psa6g0117 1874 Gene3D - 823 1281 IPR036188 -
Psa6g0117 1874 Coils Coil 1299 1319 - -
Psa6g0117 1874 Gene3D - 564 669 IPR036388 -
Psa6g0117 1874 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 493 1870 - -
Psa6g0117 1874 PANTHER FLAVIN MONOAMINE OXIDASE 493 1870 - -
Psa6g0117 1874 Gene3D - 910 1238 - -
Psa6g0117 1874 SUPERFAMILY FAD-linked reductases, C-terminal domain 1121 1232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0117 Psa-Chr6 3638097 3649616 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Psa6g0117 Amino_oxidase 5e-106 CL0063