Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6512 ATGGTTTTCTCTTCTATTCCATCTTATTTAGATCCTCTCAATTGGCAGCAACAACCAAATCAACATCAGTTGCTTCCACCACTATCCTCATCGCAGTCGCAAGGTGCAGGCTCGATAATCAGACCTGGATCGATACCGAATCAAGCTCAAACTCAAACTCAGACTCAGATAGGTCAGACTCAGGAAATTCAAGCAGGCCAGACTCAGACTCAGACTCAGGTAGCTAAGCTACCACAACAAGAGACAGCTTTGAAGTGTCCTCGTTGTGAATCAACCAACACTAAATTTTGTTACTACAACAACTATAACTTATCTCAACCAAGACACTTCTGTAAGACGTGTAGGCGTTATTGGACGAGAGGGGGTGCATTGAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAGCAAAAAGACCAAAAAGAGTAACACCACTACTAGTACTACTACTCCTTCCAAATCTTCAATATCTAATAGTAATGAAAAAGATTATTCAACAAGTGCAATCCATTCAACTTCAACACCTTTCGGAGAGTTCTTGAATCCAAGTAACAAAACCTACATGAACATGGCATCTCTTCAGAATCTGAGTCGCTATGGTGTTGGAAGCGTTGGTAATATGGGATTTCAAATCGGAGATTATAGTGGAGGTGGAGAAGGTGGTGGAGGTTTGGATCAATGGCGGTTTCAGCAATTTCCTTTCATGAATAATGGTTTTGAATCAACTACTTCAAATGTTTCTTTCCCATTTCAAAGTGAAATTCTTGAACCACAAGCTTCTTCTAGGGCTAATACTCAGATACCTGCATCGGTTAAATCGGAACACAACGGAGGTTTGAGTTTCTTAAGATCTCCTCTGAGTGTCTCAGAGAATAACAACAACCATTACAATTCATGGACTGATTTTTCTGGTCTCGCGTCTTCTTCCGCTAGTCGTCTCTTGTAA 945 0.4116 MVFSSIPSYLDPLNWQQQPNQHQLLPPLSSSQSQGAGSIIRPGSIPNQAQTQTQTQIGQTQEIQAGQTQTQTQVAKLPQQETALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSNTTTSTTTPSKSSISNSNEKDYSTSAIHSTSTPFGEFLNPSNKTYMNMASLQNLSRYGVGSVGNMGFQIGDYSGGGEGGGGLDQWRFQQFPFMNNGFESTTSNVSFPFQSEILEPQASSRANTQIPASVKSEHNGGLSFLRSPLSVSENNNNHYNSWTDFSGLASSSASRLL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6512 314 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Psa5g6512 314 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Psa5g6512 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 311 IPR045174 GO:0003700|GO:0006355
Psa5g6512 314 MobiDBLite consensus disorder prediction 129 168 - -
Psa5g6512 314 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 19 311 - -
Psa5g6512 314 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
Psa5g6512 314 MobiDBLite consensus disorder prediction 142 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6512 Psa-Chr5 549805082 549806216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6512 1 308 C2C2-Dof Transcription Factor Family AT2G37590 36.047 4.48e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa5g6512 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6512 - - cam:101511165 301.212