Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6362 ATGCAAACCAATCTCATTGTACGGCAAATACCGATATATTTTTTTATCTTAGTGAGTAGAATTTTTTTGTTATATATACCAACCTACCATACACCTGTGCCTCTCCACTACCAACCTCATTTCACATTTTTCACTCTCTCCATTCCTCTCTTTGTCTTCTTTAATATCCCACTCCAACGACGAAATTTGTTGTATGAAATGGATCCTTCTTCTCAGCAAATGTCAAGGCAATCATCAATGGAAAACATGTTGGTTTGTTCAAAAGAACAGCAAGAAAGCAAACCCAAGCCTCAGCCGGAACAAGCTCTGAAATGTCCGAGATGTGATTCGACCAACACCAAATTCTGTTACTACAACAATTACAGTCTTACTCAGCCGAGATATTTCTGCAAATCTTGCCGGAGATATTGGACCAAAGGTGGAACATTGAGGAATGTTCCTGTTGGTGGCGGGTGTAGGAAGAACAAAAGATCATCGTCTTCGAAGAGGATTCAAGATCAAGCATTCGCGCCGAATCATAATCCGTTTTCGAACTTACCTCATTTTGATCAATCTAATGATTTTGCGTTAGCGTTGGCTAGGCTTCAGAAACAATCATGTGGTGGACAAATGGGTTATGATGAAAACGAGCTTTCAATGTTGGGAAATAGTGGATCAAGCATGAACCAGTCGATGAGCATAAATCATGGGTTTATGGATGCGATTAGAAGTGGTTTATTCCTTGGAAATGGAATGCATTATAATAATAGTGTTCAAAATATGTATGGTGGTGGCTATGGAAATGGTGACAATGGAGAAGTGAATAGTGGAAACAACAATTGTGGGGTTAGTGAAGAGATGATGTTTAATTATGATCAAGAAATGAGCCATTGCAATGCTGCTATTAACATGAAGCAAGAGCAAAGTGAAAGTAGGGTTTTTGGTGGTTTTCCATGGCAGATAAATGGAGGAATTGGAAACATGGGTGAAGTTGAACAAGCAAGAGCAAGTTGGAATAATGGTTTCACTACACCTTCTTGGCAAGGGCTTCTTCATAGTCCTCTAATGTAG 1050 0.3933 MQTNLIVRQIPIYFFILVSRIFLLYIPTYHTPVPLHYQPHFTFFTLSIPLFVFFNIPLQRRNLLYEMDPSSQQMSRQSSMENMLVCSKEQQESKPKPQPEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRIQDQAFAPNHNPFSNLPHFDQSNDFALALARLQKQSCGGQMGYDENELSMLGNSGSSMNQSMSINHGFMDAIRSGLFLGNGMHYNNSVQNMYGGGYGNGDNGEVNSGNNNCGVSEEMMFNYDQEMSHCNAAINMKQEQSESRVFGGFPWQINGGIGNMGEVEQARASWNNGFTTPSWQGLLHSPLM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6362 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 348 IPR045174 GO:0003700|GO:0006355
Psa5g6362 349 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Psa5g6362 349 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Psa5g6362 349 Pfam Dof domain, zinc finger 101 157 IPR003851 GO:0003677|GO:0006355
Psa5g6362 349 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 71 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6362 Psa-Chr5 540259295 540260893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6362 101 349 C2C2-Dof Transcription Factor Family AT2G28510 41.948 8.01e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa5g6362 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6362 - - gmx:100799737 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6362 5 540259295 540260893 Psa5g6362 5 540259295 540260893 ECH
Psa5g6362 5 540259295 540260893 Psa7g5087 7 446506757 446508601 PCT