Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5208 ATGTCACCACCATTTTCCCTTCTCTTTTTCATACTCTTAGCACCATTATTACTTCTAGCTCAATCTCCATCTCCATCTTCGTCTCCTTCGGCCGCGTGCAAAGCGACATTGTATCCAAAACTCTGTCGCTCGATTTTATCCACCATCCGATCATCGACTTCAGATCCATATAACTACGGAAAATTCTCCATAAAACAAAACCTTAAACTAACAAAAAAGCTCTCAAAAGTATTTCTCGATTTCCTCAAACGGCACCAATCGTCGTCCTCTCTAAACCATGAAGAGTTTGGCGCATTAGTTGATTGCAAAGACCTTAACCAGCTCAATGTAGACTACTTAGAATCAATCTCTGATGAACTCAAATCAGCCACTAGTTCATCCTCAGATACAGAACTTGTTGATAAAATTGAAAGCTATCTTAGTGCTGTTAGTACTAATCACTACACTTGCTTTGATGGGTTGGTGGTGACAAAAAGTAACATTGCTAATGCTCTTGCTGTTCCATTGAAAGATGCTACACAGTTTTATAGTGTCTCACTTGGATTGGTTAGTGATGCTTTGAATAAACACATGAAGAGGAATAAGACACGCAAACATGGTCTTCCTAATAAGTCATTCAAAGTTAGACAACCACTTGAGAAGCTTATCAAGCTTCTCCGGACAAAATATAGTTGCAAGAAAACATTAAATTGTACAAATACAAGAAGTGAAAGGATTCTTAAACAAAGTGAAAGCCAAGGAATTTTATTGAACGATTATGTGCTTGTGAGTCCTTATGGAAATGCCAACCACACTTCCATTGGAGATGCTATTGCTGCTGCACCAAATAACTCAACTCCACAAGATGGTTATTTTCTTATCTATGTTAGAGAAGGTTACTATGACGAATATGTCATTGTTCCTAAAGAAAAGAAGAATATTCTTCTTGTTGGAGATGGTATTAACAAAACAATCATCACAGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCTGGAGAAAGATTTATAGCAGTGGACATTACATTCAGAAACACAGCAGGTCCTGAAAAACATCAAGCAGTAGCCGTAAGAAACAATGCGGATCTCTCGACGTTCTACCGATGCAGCTTCGAAGGATATCAAGACACACTCTATGTTCATTCATTAAGACAATTCTATAGAGACTGCAAAATCTATGGAACCGTCGACTTCATATTCGGCAACGCAGCTGTAGTTTTCCAGAACTGCAACATCTATGCTAGAAAGCCACTTCCAAATCAGAAAAATGCTGTCACAGCACAAGGAAGAACCGATCCAAATCAAAACACTGGAATCTCAATCCAAAACTGCACTGTCGATGCTGCACCTGATTTGGCTGATAACTCGAACTCAACATTGAGTTACTTAGGTAGACCATGGAAGATTTACTCAAGAACTGTTTATATGCAATCCTACATTGGTGATTTTGTTGATCCTTCCGGTTGGTTAGAGTGGAACGGAACGCTCGGATTAGACACTATTTTCTACGGCGAGTTTGATAACTATGGACCTGGTTCTTCAACTGATAATAGGGTTCAATGGCCTGGTTATTTTCTTTTGAATGATACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACATGGCTTCCTGATACAGATATACCTTACGCGGAAGGATTACTAAACTAA 1707 0.3872 MSPPFSLLFFILLAPLLLLAQSPSPSSSPSAACKATLYPKLCRSILSTIRSSTSDPYNYGKFSIKQNLKLTKKLSKVFLDFLKRHQSSSSLNHEEFGALVDCKDLNQLNVDYLESISDELKSATSSSSDTELVDKIESYLSAVSTNHYTCFDGLVVTKSNIANALAVPLKDATQFYSVSLGLVSDALNKHMKRNKTRKHGLPNKSFKVRQPLEKLIKLLRTKYSCKKTLNCTNTRSERILKQSESQGILLNDYVLVSPYGNANHTSIGDAIAAAPNNSTPQDGYFLIYVREGYYDEYVIVPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTVDAAPDLADNSNSTLSYLGRPWKIYSRTVYMQSYIGDFVDPSGWLEWNGTLGLDTIFYGEFDNYGPGSSTDNRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYAEGLLN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5208 568 Pfam Plant invertase/pectin methylesterase inhibitor 30 181 IPR006501 GO:0004857
Psa5g5208 568 SUPERFAMILY Pectin lyase-like 252 565 IPR011050 -
Psa5g5208 568 Pfam Pectinesterase 254 551 IPR000070 GO:0030599|GO:0042545
Psa5g5208 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 165 IPR006501 GO:0004857
Psa5g5208 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 184 IPR035513 -
Psa5g5208 568 PANTHER PECTINESTERASE 5 566 - -
Psa5g5208 568 PANTHER PECTINESTERASE 5 566 - -
Psa5g5208 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Psa5g5208 568 SMART PMEI_2 24 182 IPR006501 GO:0004857
Psa5g5208 568 CDD PMEI-like_3 31 184 - -
Psa5g5208 568 Gene3D - 249 566 IPR012334 -
Psa5g5208 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5208 Psa-Chr5 458699811 458704006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5208 32 568 Carbohydrate Esterase AT3G10720 61.439 0.0 695
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5208 5 458699811 458704006 Psa4g3332 4 281827798 281832291 PCT