Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5207 ATGTCTTCCTTCAAGTCCTATGGAAAAGTTAACGAACTTGATCAAATGATGTTAGAAGCAAAGAGAAAAACCCGAAAGAGAATCACAATCATAAGCTTATCTTCAATAATCTTAGTTACTATTGTAGTTGCATCTATATTTGGAGTTGTTAACAACAAAAACAACTCGAAAAACGATGATAACAATAACGCATCACAAGATCCTGCGACAAGTTCTATTAAAGCTGTTTGTGATGTGACATTGTACAAGGAATCATGTTATGAAAGCCTTGGTTCTGTTGTGAACTCATCAGGAAAAGATTTTCAACCTGAGGAGTTGTTTAAGTTATCAATGAATGTAGCTTTAACTTATGTGTCTAAAGCTGTTGAGTATTTCAACGAACATGGCGTTTTCGAAAAGTTGATTGGTGATGATGATAGTAGAACTAAGAAAGCTTTGAAAAACTGTAAGGCTCTTTTCGAACTCGCTGTTGATCATTTGAATAACTCGGTGATTACTTCCGGAGAAAATTCATCACTTCTTCGAGTTTTTGATGATCTCCAAACATGGTTAAGCGCCGCAGGTACATACCAAGAAACATGCATTGAAGGTTTTGAGGATGGAAAAGAAGAGCTTAAGACAAGTGTTATAAGCCATCTTAAAAATTCTACAGAATACACAAGCAATAGTCTCGCGATAATTACATGGATTAACAAGGTTGCGAGTACTCTAAATTTGAGGCGTTTACTGAGTTTACCTTACGAAAACGAATCGCCGAAGTGGTTTCATTCAAAAGATAGGAAGTTGCTTGTTACAAAGGATTTGAGATCAAAAGCTGATATTGTTGTGGCGAAAGATGGTAGTGGAAAATATAGAACTATATCTGAAGCACTTAAGCATGTTGCTGATAAGAGTAAGAAGAGGGTTGTGATTTATGTGAAGAAAGGGATTTACTATGAAAATGTAAGAGTTGAGAAAACAAAATGGAATGTTATGATTATTGGTGATGGTATGACTTCTTCCGTTGTTTCCGGTAAGCTTAACTTCGTCGATGGCACACCGACTTTTTCATCTGCAACATTTGCTGTGTTTGGGAAGAATTTCATAGCTAGAGACATGGGATTTCGCAACACGGCCGGTCCACAGAAGCATCAGGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTATACTATAAGTGTCACATTGATGCATATCAAGACACTCTTTATGCGCATTCGAATCGTCAATTCTATAGAGAATGCAACATTTACGGAACAGTCGATTTCATTTTCGGAAACTCTGCAGTTGTGATACAAAACTGCAACATTATGCCGAAGTTACCTATGCATGGACAACAGATCACAATCACAGCACAGGGAAAAACTGACCCTAACATGAACACAGGTATTTCAATTCAATATTGCAACATTTCGCCTTTTGGAAACTTGAGTGATGTTCGAACATACCTCGGAAGACCGTGGAAGAATTACTCGACAACGGTATACATGAGATCGAGAATGGAAGGTTTTGTTAACCCAAATGGTTGGTTACCTTGGGTAGGAAACTCAGCACCAGACACTATTTTTTATGCAGAATTTCAAAATGTTGGAGCAGGTTCTTCAACAAAGAATAGAGTAAAATGGAAGGGTTTGAAAAACATTACCATTAAACAAGCTAGTCAATTTTCAGTTAAGAGTTTTATTCAAGGTGATAGATGGATTCATGCATCAAATGCACCTTTTAAGTCTACTATATGA 1740 0.3707 MSSFKSYGKVNELDQMMLEAKRKTRKRITIISLSSIILVTIVVASIFGVVNNKNNSKNDDNNNASQDPATSSIKAVCDVTLYKESCYESLGSVVNSSGKDFQPEELFKLSMNVALTYVSKAVEYFNEHGVFEKLIGDDDSRTKKALKNCKALFELAVDHLNNSVITSGENSSLLRVFDDLQTWLSAAGTYQETCIEGFEDGKEELKTSVISHLKNSTEYTSNSLAIITWINKVASTLNLRRLLSLPYENESPKWFHSKDRKLLVTKDLRSKADIVVAKDGSGKYRTISEALKHVADKSKKRVVIYVKKGIYYENVRVEKTKWNVMIIGDGMTSSVVSGKLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIMPKLPMHGQQITITAQGKTDPNMNTGISIQYCNISPFGNLSDVRTYLGRPWKNYSTTVYMRSRMEGFVNPNGWLPWVGNSAPDTIFYAEFQNVGAGSSTKNRVKWKGLKNITIKQASQFSVKSFIQGDRWIHASNAPFKSTI* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5207 579 Pfam Plant invertase/pectin methylesterase inhibitor 72 226 IPR006501 GO:0004857
Psa5g5207 579 PANTHER PECTINESTERASE 5 577 - -
Psa5g5207 579 SUPERFAMILY Pectin lyase-like 270 576 IPR011050 -
Psa5g5207 579 SMART PMEI_2 68 226 IPR006501 GO:0004857
Psa5g5207 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 231 IPR035513 -
Psa5g5207 579 PANTHER PECTINESTERASE 5 577 - -
Psa5g5207 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 230 IPR006501 GO:0004857
Psa5g5207 579 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
Psa5g5207 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 230 IPR035513 -
Psa5g5207 579 CDD PMEI-like_3 75 232 - -
Psa5g5207 579 Gene3D - 268 579 IPR012334 -
Psa5g5207 579 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5207 Psa-Chr5 458697340 458699433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5207 7 579 Carbohydrate Esterase AT3G10710 55.923 0.0 672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5207 5 458697340 458699433 Psa4g3334 4 281867127 281869627 PCT